View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10486_low_2 (Length: 587)

Name: NF10486_low_2
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10486_low_2
NF10486_low_2
[»] chr4 (18 HSPs)
chr4 (1-572)||(3748766-3749337)
chr4 (12-246)||(5858204-5858438)
chr4 (33-230)||(5564956-5565153)
chr4 (45-220)||(5605283-5605458)
chr4 (417-538)||(5853280-5853401)
chr4 (417-538)||(5553023-5553144)
chr4 (1-217)||(5886169-5886385)
chr4 (432-572)||(5571412-5571552)
chr4 (480-566)||(5583667-5583753)
chr4 (330-526)||(5857963-5858156)
chr4 (156-268)||(5852983-5853095)
chr4 (482-572)||(5886539-5886629)
chr4 (478-566)||(5539595-5539683)
chr4 (156-268)||(5553329-5553441)
chr4 (156-220)||(5895169-5895233)
chr4 (171-220)||(252329-252378)
chr4 (417-538)||(5564612-5564733)
chr4 (482-571)||(5895384-5895473)
[»] chr8 (1 HSPs)
chr8 (48-217)||(1483224-1483393)


Alignment Details
Target: chr4 (Bit Score: 540; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 3749337 - 3748766
Alignment:
Q  1 cactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749337 cactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacac 3749238  T
Q  101 aaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatctttctttttgtcaattcaatggaacacttccaaattca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749237 aaacttctatggagcattacctaacattattggaaacctgagaaaattatctactttggatctttctttttgtcaattcaatggaacacttccaaattca 3749138  T
Q  201 ttgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccggtccaatgccatcctttgacatggnnnnnnnnctcaccaactcat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  3749137 ttgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccggtccaatgccatcctttgacatggaaaaaaaactcaccaactcat 3749038  T
Q  301 catcttctcacaatcaaggattgcataaccttgtcaccattaacttgagcaacaattctatcacgggtgccattccttcattcctttttaaacttccatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749037 catcttctcacaatcaaggattgcataaccttgtcaccattaacttgagcaacaattctatcacgggtgccattccttcattcctttttaaacttccatt 3748938  T
Q  401 gttaaaaaatatttggctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaac 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3748937 gttaaaaaatatttggctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattagacaccctagatttaagcaacaac 3748838  T
Q  501 gatctatcaggaccttttccaatatctgtcttgcagctcaagtcactttctgtcctcgatctttccactaac 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3748837 gatctatcaggaccttttccaatatctgtcttgcagctcaagtcactttctgtcctcgatctttccactaac 3748766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 5858438 - 5858204
Alignment:
Q  12 attgacttgtttaacaacaaaaatctccatggcttttttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatg 111  Q
    |||||||| |||  |||| ||||||||| ||| |  |||||| |||||||| | |||||||||||||| | ||||||||| ||| |||||||||||| ||    
T  5858438 attgacttattttccaacgaaaatctccgtggttcatttccaaactactcactaagtgaatctcttcatagaattagagtgagtgacacaaacttctctg 5858339  T
Q  112 gagcattacctaacattattggaaacctgagaaagttatctactttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacct 211  Q
    || ||||||||| |  |||||| ||| ||||  ||||||||   ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  5858338 gaccattacctagctctattggcaacttgaggcagttatctgaattggatctttctttttgtcaatttaatggaacccttccaaattcattgtcaaacct 5858239  T
Q  212 cacacaactgagttacttgaatctgtggtctaaca 246  Q
    |||||| || ||||||||| ||||||  |||||||    
T  5858238 cacacacctcagttacttggatctgtcatctaaca 5858204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 5565153 - 5564956
Alignment:
Q  33 aatctccatggcttttttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattg 132  Q
    ||||||||||| |  || ||| |||||||| | |||||||||||||| |  |||| ||| ||| |||||||||||| |||||||||||||| |  |||||    
T  5565153 aatctccatggttcattcccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattg 5565054  T
Q  133 gaaacctgagaaagttatctactttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttg 230  Q
    | ||  ||||  | |||||||  |||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  5565053 gcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttg 5564956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 5605458 - 5605283
Alignment:
Q  45 ttttttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaa 144  Q
    ||||||||| |||||||| | |||||||||||||| |  ||||  |  |||||||||| ||||| |||||||||||||| |  |||||| ||| ||||      
T  5605458 ttttttccagactactcacttagtgaatctcttcacagcattatggcgagtaacacaagcttctctggagcattacctagctctattggcaacttgaggc 5605359  T
Q  145 agttatctactttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaact 220  Q
    | ||||||   ||| |||||||   ||||||||| |||||||||||| | ||||||||||||||||||||||||||    
T  5605358 acttatctgaattgtatctttccagttgtcaatttaatggaacactttccaattcattgtcaaacctcacacaact 5605283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 417 - 538
Target Start/End: Original strand, 5853280 - 5853401
Alignment:
Q  417 ctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaacgatctatcaggacctt 516  Q
    |||||||  ||||||||||  || |||||||||||||||||||  | |||||||||||||||  ||||||||||||| | ||| ||||||||||| ||||    
T  5853280 ctttcatccaaccactttaacaatctagaagaattcacaatcatatattcctccgtattagaatcccttgatttaagaagcaatgatctatcagggcctt 5853379  T
Q  517 ttccaatatctgtcttgcagct 538  Q
    |||||| |||| | ||||||||    
T  5853380 ttccaaaatctatattgcagct 5853401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 417 - 538
Target Start/End: Complemental strand, 5553144 - 5553023
Alignment:
Q  417 ctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaacgatctatcaggacctt 516  Q
    |||||||| |||||||| |||||||| ||||||||||||||||  ||||||||  |||||||  ||||||| ||||| | ||| |||| |||||| ||||    
T  5553144 ctttcattcaaccacttcagtaaacttgaagaattcacaatcatatcttcctctatattagaatcccttgaattaagaagcaatgatcaatcagggcctt 5553045  T
Q  517 ttccaatatctgtcttgcagct 538  Q
    |||||| |||| | ||||||||    
T  5553044 ttccaaaatctatattgcagct 5553023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5886169 - 5886385
Alignment:
Q  1 cactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacac 100  Q
    ||||||||| ||||||||| | | |||||   ||||||||||  ||||| ||  | |||||| | ||||||| |||||| |  |||||||| ||||||||    
T  5886169 cactgtcaattattgacttatctgacaaccccaatctccatgtttttttccctgattactcacttagtgaatatcttcatagcattagagtgagtaacac 5886268  T
Q  101 aaacttctatggagcattacctaacattattggaaacctgagaaagttatctact-ttggatctttctttttgtcaattcaatggaacacttccaaattc 199  Q
    || ||||| ||||||||| || |||| ||| || ||| ||| ||| ||| || || |||||| ||||||| |||||| |  ||||||||||||| |||||    
T  5886269 aagcttctctggagcatttccaaacaatatcggtaacatgacaaactta-ctcctattggatatttctttctgtcaactatatggaacacttcccaattc 5886367  T
Q  200 attgtcaaacctcacaca 217  Q
    | ||||||| ||||||||    
T  5886368 actgtcaaatctcacaca 5886385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 432 - 572
Target Start/End: Original strand, 5571412 - 5571552
Alignment:
Q  432 tttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaacgatctatcaggaccttttccaatatctgtct 531  Q
    ||||||||| | || ||||||| || ||  |||||||| ||| |  |||||||||||||||| | |||  |||||||||| |||||||||| |||| |||    
T  5571412 tttagtaaatttgacgaattcaaaaacatgtcttcctctgtaattaacacccttgatttaagtagcaataatctatcagggccttttccaacatctatct 5571511  T
Q  532 tgcagctcaagtcactttctgtcctcgatctttccactaac 572  Q
    | ||| |||  ||||||| ||||||||||||||||| ||||    
T  5571512 tccagttcagatcactttatgtcctcgatctttccattaac 5571552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 480 - 566
Target Start/End: Original strand, 5583667 - 5583753
Alignment:
Q  480 acccttgatttaagcaacaacgatctatcaggaccttttccaatatctgtcttgcagctcaagtcactttctgtcctcgatctttcc 566  Q
    |||||||||||||||||||| ||||||||||| || |||||||| ||| ||||  | ||| | || |||||||||||||||||||||    
T  5583667 acccttgatttaagcaacaatgatctatcagggccatttccaatgtctatctttaaactccattcgctttctgtcctcgatctttcc 5583753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 330 - 526
Target Start/End: Complemental strand, 5858156 - 5857963
Alignment:
Q  330 cttgtcaccattaacttgagcaacaattctatcacgggtgccattccttcattcctttttaaacttccattgttaaaaaatatttggctttcattgaacc 429  Q
    |||||||| ||| |||| |  ||||||||||| |  |||  ||| ||||| ||||| |||| ||| ||||| ||| || |  || |||||||||| ||||    
T  5858156 cttgtcactatttacttaattaacaattctatgaacggtatcatcccttccttcctatttagactcccattattacaagagcttcggctttcattcaacc 5858057  T
Q  430 actttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaacgatctatcaggaccttttccaatatc 526  Q
    | ||||||| | ||||||||||||||||||  ||||||||   |||  |||  ||||||||||||| ||| ||| ||||||| ||||||||||||||    
T  5858056 aatttagtatattagaagaattcacaatcatgtcttcctc---attgaacattcttgatttaagcagcaatgatttatcagggccttttccaatatc 5857963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 5852983 - 5853095
Alignment:
Q  156 ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccg 255  Q
    ||||||||||||  || |||||| |||||||||||||| |||||||| |||||||| ||| |||| ||||||||| || |||  | ||||||||| || |    
T  5852983 ttggatctttctaattctcaatttaatggaacacttcccaattcattttcaaacctaacagaactaagttacttggatttgtcatttaacagtttcacag 5853082  T
Q  256 gtccaatgccatc 268  Q
    |||| || |||||    
T  5853083 gtccgataccatc 5853095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 482 - 572
Target Start/End: Original strand, 5886539 - 5886629
Alignment:
Q  482 ccttgatttaagcaacaacgatctatcaggaccttttccaatatctgtcttgcagctcaagtcactttctgtcctcgatctttccactaac 572  Q
    |||||||||||| | |||  || ||||||| |||||||||| |||| |||| |||||||| |||||||||||||||  ||||||| |||||    
T  5886539 ccttgatttaagtagcaataatatatcagggccttttccaacatctatcttccagctcaattcactttctgtcctcagtctttcctctaac 5886629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 566
Target Start/End: Original strand, 5539595 - 5539683
Alignment:
Q  478 acacccttgatttaagcaacaacgatctatcaggaccttttccaatatctgtcttgcagctcaagtcactttctgtcctcgatctttcc 566  Q
    |||||||||||||||| | |||  ||||||||||  ||||||||| |||| |||| |||||    ||||||||||||||||||||||||    
T  5539595 acacccttgatttaagtagcaataatctatcagggtcttttccaacatctatcttccagcttcgttcactttctgtcctcgatctttcc 5539683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 268
Target Start/End: Complemental strand, 5553441 - 5553329
Alignment:
Q  156 ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtggtctaacagttttaccg 255  Q
    ||||||||||||  || |||||  |||||||||||||| |||||||| |||||||| ||| |||| ||||||||| || |||  | ||||||||| || |    
T  5553441 ttggatctttctaattctcaatataatggaacacttcccaattcattttcaaacctaacagaactaagttacttggatttgtcatttaacagtttcacag 5553342  T
Q  256 gtccaatgccatc 268  Q
    |||| || |||||    
T  5553341 gtccgataccatc 5553329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 5895169 - 5895233
Alignment:
Q  156 ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaact 220  Q
    |||||||||||||  |||||| |  ||||||||||||| |||||| |||||||||||||||||||    
T  5895169 ttggatctttcttactgtcaactatatggaacacttcccaattcactgtcaaacctcacacaact 5895233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 252329 - 252378
Alignment:
Q  171 tgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaact 220  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||| ||||    
T  252329 tgtcaatttaatggtacacttcccaattcattgtcaaacctcacaaaact 252378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 417 - 538
Target Start/End: Complemental strand, 5564733 - 5564612
Alignment:
Q  417 ctttcattgaaccactttagtaaactagaagaattcacaatcaattcttcctccgtattagacacccttgatttaagcaacaacgatctatcaggacctt 516  Q
    |||||||| |||||||| | || | |||| ||||| |||||||  ||| |||||  |||| |||| ||||||||||||| |||  ||||||| || ||||    
T  5564733 ctttcattcaaccacttcaatacagtagatgaatttacaatcatctctccctcctcattaaacactcttgatttaagcagcaatcatctatctggtcctt 5564634  T
Q  517 ttccaatatctgtcttgcagct 538  Q
    |||||| |||| |||| |||||    
T  5564633 ttccaacatctatctttcagct 5564612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 482 - 571
Target Start/End: Original strand, 5895384 - 5895473
Alignment:
Q  482 ccttgatttaagcaacaacgatctatcaggaccttttccaatatctgtcttgcagctcaagtcactttctgtcctcgatctttccactaa 571  Q
    |||||||||||| | |||  |||||||||| |||||||||| |||| |||| ||||||   ||||||||| ||||| |||||||| ||||    
T  5895384 ccttgatttaagtagcaataatctatcagggccttttccaacatctatcttccagctccgttcactttctttcctctatctttcctctaa 5895473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 48 - 217
Target Start/End: Complemental strand, 1483393 - 1483224
Alignment:
Q  48 tttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagt 147  Q
    |||||| |||||||| | |||||||||||||  | ||||||||| ||| ||||||  || |  |||| |||||| |||  |||||| ||  ||||  | |    
T  1483393 tttccaaactactcacttagtgaatctcttcgtagaattagagttagttacacaagtttatcaggagaattaccaaactctattggcaaattgaggtact 1483294  T
Q  148 tatctactttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacaca 217  Q
    |||||   ||||||||| |||  |||||||| |||||||||||||| |||||| |||| |||||||||||    
T  1483293 tatctgaattggatcttccttactgtcaatttaatggaacacttcccaattcaatgtccaacctcacaca 1483224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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