View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10486_low_20 (Length: 241)

Name: NF10486_low_20
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10486_low_20
NF10486_low_20
[»] chr8 (5 HSPs)
chr8 (1-225)||(38454139-38454363)
chr8 (54-224)||(39847926-39848097)
chr8 (119-220)||(34534115-34534216)
chr8 (56-220)||(34916678-34916843)
chr8 (56-222)||(38632217-38632388)
[»] chr4 (1 HSPs)
chr4 (70-209)||(44474046-44474185)
[»] chr3 (1 HSPs)
chr3 (70-219)||(7046903-7047052)
[»] chr6 (2 HSPs)
chr6 (111-220)||(14905186-14905295)
chr6 (119-220)||(14904772-14904873)
[»] chr5 (3 HSPs)
chr5 (116-220)||(2997941-2998045)
chr5 (116-179)||(2998561-2998624)
chr5 (114-211)||(2997732-2997829)
[»] chr2 (2 HSPs)
chr2 (128-220)||(32716649-32716741)
chr2 (128-220)||(32716856-32716948)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38454363 - 38454139
Alignment:
Q  1 gcatgtatgcatggttctgttatattcattcttagcattctattctgcagccgtgtattatgattatgattcattgtttcttgtaaactgtaggtttaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38454363 gcatgtatgcatggttctgttatattcattcttagcattctattctgcagccgtgtattatgattatgattcattgtttcttgtaaactgtaggtttaat 38454264  T
Q  101 cagatattctattcaaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatg 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38454263 cagatattctattcaaatggggatgtctacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatgtggatcagtatatg 38454164  T
Q  201 agggtgattggattgatggagatat 225  Q
    |||||||||||||||||||||||||    
T  38454163 agggtgattggattgatggagatat 38454139  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 39847926 - 39848097
Alignment:
Q  54 tgtattatgattatgatt-cattgtttcttgtaaactgtaggtttaatcagatattctattcaaatggggatgtttacgttggtaacttcaaggatgaac 152  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||  |||| || |||||| ||| || ||||||| |||||||| ||||||||| ||    
T  39847926 tgtattatgattatgatttcattgtttcttgtaaactgtaggtttaaagagatgttgtattcagatgagggtgtttacattggtaacatcaaggatggac 39848025  T
Q  153 tttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatggagata 224  Q
    ||  |||||||||  |||||| ||||| ||||   |||||| |||||| |||||||||| ||||||||||||    
T  39848026 ttgctcatggcaaaagaaagtacacatggtcagatggatcaatatatgtgggtgattgggttgatggagata 39848097  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 34534216 - 34534115
Alignment:
Q  119 ggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatg 218  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||||||||| |||| ||||| ||||   ||| || |||||||||| |||||| ||||||    
T  34534216 ggggatgtctacattggtaacttcaagggtgaactttgtcatggcaacgggaagtacacatggtcagatggaacaatatatgagggcgattgggttgatg 34534117  T
Q  219 ga 220  Q
    ||    
T  34534116 ga 34534115  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 34916843 - 34916678
Alignment:
Q  56 tattatgattatgatt-cattgtttcttgtaaactgtaggtttaatcagatattctattcaaatggggatgtttacgttggtaacttcaaggatgaactt 154  Q
    |||||||||||||||| ||| |||||||||||| |||||  ||||  |||  | || ||||||||||||||| ||| ||||||| ||||||| |||||||    
T  34916843 tattatgattatgatttcatcgtttcttgtaaagtgtagtgttaaagagaagtccttttcaaatggggatgtctacattggtaaattcaagggtgaactt 34916744  T
Q  155 tttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatgga 220  Q
     | |||||||  ||||||| ||||| | ||   ||| || |||| |||||||| ||| ||||||||    
T  34916743 ctccatggcatgggaaagtacacatggacaaatggaacaatatacgagggtgactgggttgatgga 34916678  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 222
Target Start/End: Original strand, 38632217 - 38632388
Alignment:
Q  56 tattatgattatgatt-cattgtttcttgtaaactgtaggtttaatcagatattctattcaaatggg----gatgtttacgttggtaacttcaaggatga 150  Q
    ||||||| |||||||| |||| |||||| ||||||||||||||||  |||| || | |||||| | |    | ||| ||| ||||||||||||||| |||    
T  38632217 tattatgtttatgatttcattctttcttttaaactgtaggtttaaagagatgttttcttcaaacgcgcgcgggtgtctacattggtaacttcaagggtga 38632316  T
Q  151 actttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatggaga 222  Q
    ||||  |||||||| |||||||| || || ||||   ||||||  |||||||||||||||| |||| |||||    
T  38632317 acttcgtcatggcagcggaaagtgcaaatggtcagatggatcaacatatgagggtgattgggttgacggaga 38632388  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 44474046 - 44474185
Alignment:
Q  70 ttcattgtttcttgtaaactgtaggtttaatcagatattctattcaaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacgga 169  Q
    |||||||||||||||||||||||||||| |  |||  ||| ||||||  |||||||| |||||||||| ||||||||||| ||||  | |||||||||||    
T  44474046 ttcattgtttcttgtaaactgtaggtttgaagagacgttcaattcaagaggggatgtctacgttggtatcttcaaggatggacttcctgatggcaacgga 44474145  T
Q  170 aagttcacattgtcatggggatcagtatatgagggtgatt 209  Q
    |||| ||||| ||||   |||||| |||||||||||||||    
T  44474146 aagtacacatggtcagatggatcaatatatgagggtgatt 44474185  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 70 - 219
Target Start/End: Complemental strand, 7047052 - 7046903
Alignment:
Q  70 ttcattgtttcttgtaaactgtaggtttaatcagatattctattcaaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacgga 169  Q
    |||||||||||||||||| |||||||||||  ||||  ||||||||||||||  ||| ||| ||| |||||| ||||   |||||  |||||||||||||    
T  7047052 ttcattgtttcttgtaaattgtaggtttaaagagatgatctattcaaatgggagtgtctacattgataactttaaggggcaacttcatcatggcaacgga 7046953  T
Q  170 aagttcacattgtcatggggatcagtatatgagggtgattggattgatgg 219  Q
    || | ||||| ||||   |||||| |||||||||| ||||||||||||||    
T  7046952 aactacacatggtcagatggatcaatatatgagggagattggattgatgg 7046903  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 14905295 - 14905186
Alignment:
Q  111 attcaaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattg 210  Q
    |||| ||||||||||| ||||||||||||||| || || | ||||| |||||||| ||||||| ||||| ||||  ||||  | ||||||||||||||||    
T  14905295 attccaatggggatgtctacgttggtaacttcgagaataatcttttccatggcaagggaaagtgcacatggtcagagggagaaatatatgagggtgattg 14905196  T
Q  211 gattgatgga 220  Q
    | || |||||    
T  14905195 ggtttatgga 14905186  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 14904873 - 14904772
Alignment:
Q  119 ggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatg 218  Q
    |||||||| ||| |||||||||||||| |||| ||||| |||||||| ||||| | ||||| |||    |||  | ||||||||||||||||| ||||||    
T  14904873 ggggatgtctacattggtaacttcaagaatgatcttttccatggcaaaggaaaatacacatggtcgaatggaaaaatatatgagggtgattgggttgatg 14904774  T
Q  219 ga 220  Q
    ||    
T  14904773 ga 14904772  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 2997941 - 2998045
Alignment:
Q  116 aatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattg 215  Q
    ||||||||||| | | ||||||||||  |  |||| ||||| |||||||| ||||||| ||||| |||| | ||| || ||||||||||||||||| |||    
T  2997941 aatggggatgtcttcattggtaactttgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttg 2998040  T
Q  216 atgga 220  Q
    |||||    
T  2998041 atgga 2998045  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 2998561 - 2998624
Alignment:
Q  116 aatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacat 179  Q
    ||||||||| | ||||||||||||||| || ||||  ||||||||||||| ||||||| |||||    
T  2998561 aatggggatatctacgttggtaacttcgagaatgatatttttcatggcaagggaaagtacacat 2998624  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 2997732 - 2997829
Alignment:
Q  114 caaatggggatgtttacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattgg 211  Q
    |||||||| |||| ||| ||||||| || ||||   || ||||||||||||| ||||||| ||||| |||| | ||| || | |||||||||||||||    
T  2997732 caaatgggcatgtctacattggtaattttaagggaaaattttttcatggcaagggaaagtacacatggtcaagtggaacaatctatgagggtgattgg 2997829  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 32716649 - 32716741
Alignment:
Q  128 tacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatgga 220  Q
    ||||||||||||||| ||  ||| ||||| |||||||| ||||||| ||| | || |   ||| || ||||||||||||||||| ||||||||    
T  32716649 tacgttggtaacttcgagagtgatcttttccatggcaagggaaagtacacgtggttaaatggaacaatatatgagggtgattgggttgatgga 32716741  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 32716856 - 32716948
Alignment:
Q  128 tacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatggggatcagtatatgagggtgattggattgatgga 220  Q
    ||||||||||||||| ||  ||| ||||| |||||||| ||||||| ||||| ||||   ||| || |||| || ||||||||| ||||||||    
T  32716856 tacgttggtaacttcgagagtgatcttttccatggcaaaggaaagtacacatggtcacatggaacaatatacgatggtgattgggttgatgga 32716948  T

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