View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10486_low_23 (Length: 231)

Name: NF10486_low_23
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10486_low_23
NF10486_low_23
[»] chr7 (26 HSPs)
chr7 (9-107)||(9718962-9719059)
chr7 (4-179)||(25886139-25886314)
chr7 (9-175)||(28770450-28770616)
chr7 (10-175)||(27123247-27123412)
chr7 (9-115)||(35496540-35496646)
chr7 (9-115)||(39320949-39321055)
chr7 (9-107)||(43234831-43234928)
chr7 (6-115)||(7653609-7653718)
chr7 (9-80)||(44537409-44537480)
chr7 (9-109)||(14651357-14651457)
chr7 (9-115)||(28663106-28663212)
chr7 (9-115)||(35731320-35731425)
chr7 (9-115)||(10200602-10200707)
chr7 (9-175)||(21727373-21727539)
chr7 (5-109)||(31902714-31902816)
chr7 (9-77)||(35923474-35923542)
chr7 (8-115)||(42936040-42936143)
chr7 (9-115)||(3692910-3693017)
chr7 (36-115)||(43224081-43224160)
chr7 (9-87)||(8920670-8920748)
chr7 (34-115)||(2347450-2347530)
chr7 (6-63)||(17473130-17473187)
chr7 (6-63)||(17580027-17580084)
chr7 (54-115)||(27337730-27337791)
chr7 (12-45)||(43996327-43996360)
chr7 (6-80)||(48488147-48488216)
[»] chr4 (36 HSPs)
chr4 (9-107)||(13585229-13585326)
chr4 (9-115)||(8261141-8261247)
chr4 (9-115)||(8274558-8274664)
chr4 (9-107)||(24175366-24175464)
chr4 (9-107)||(7852511-7852609)
chr4 (6-104)||(47995701-47995799)
chr4 (9-175)||(45900116-45900282)
chr4 (9-115)||(7444352-7444458)
chr4 (9-218)||(24396123-24396325)
chr4 (9-115)||(41462082-41462187)
chr4 (9-115)||(51834947-51835053)
chr4 (36-175)||(8297844-8297983)
chr4 (9-115)||(31690415-31690520)
chr4 (9-115)||(50341834-50341940)
chr4 (38-115)||(31429310-31429387)
chr4 (9-80)||(23605634-23605705)
chr4 (5-100)||(24229609-24229704)
chr4 (9-115)||(37440859-37440965)
chr4 (6-99)||(40252705-40252796)
chr4 (6-114)||(50427023-50427131)
chr4 (7-107)||(53014171-53014271)
chr4 (36-107)||(35777693-35777764)
chr4 (54-109)||(39195739-39195794)
chr4 (9-99)||(35180572-35180662)
chr4 (9-115)||(36702817-36702919)
chr4 (30-115)||(37060581-37060667)
chr4 (9-115)||(37138129-37138235)
chr4 (34-115)||(48337589-48337671)
chr4 (9-102)||(32692920-32693012)
chr4 (7-60)||(39827114-39827167)
chr4 (12-52)||(54700934-54700974)
chr4 (9-107)||(25115231-25115328)
chr4 (47-175)||(27953046-27953173)
chr4 (9-40)||(44690229-44690260)
chr4 (9-91)||(7628016-7628097)
chr4 (6-63)||(11875384-11875440)
[»] scaffold0036 (1 HSPs)
scaffold0036 (9-175)||(62492-62658)
[»] chr5 (21 HSPs)
chr5 (9-172)||(16667259-16667422)
chr5 (5-115)||(3140847-3140957)
chr5 (9-175)||(30501106-30501273)
chr5 (9-175)||(30541449-30541616)
chr5 (8-179)||(2918562-2918734)
chr5 (35-115)||(9276573-9276653)
chr5 (30-172)||(7719180-7719322)
chr5 (34-115)||(8208212-8208293)
chr5 (33-104)||(34899127-34899198)
chr5 (9-115)||(17692295-17692400)
chr5 (9-107)||(18229569-18229667)
chr5 (28-87)||(7968451-7968510)
chr5 (48-175)||(24041030-24041155)
chr5 (9-115)||(39558734-39558840)
chr5 (6-115)||(8221155-8221264)
chr5 (38-115)||(14043414-14043491)
chr5 (10-115)||(15720100-15720204)
chr5 (6-114)||(112450-112558)
chr5 (36-103)||(23117221-23117288)
chr5 (9-115)||(31557994-31558099)
chr5 (9-57)||(40530128-40530176)
[»] chr3 (15 HSPs)
chr3 (33-115)||(26900014-26900096)
chr3 (9-175)||(48180138-48180304)
chr3 (9-107)||(29083866-29083965)
chr3 (9-115)||(24791529-24791637)
chr3 (4-87)||(45529082-45529164)
chr3 (29-104)||(51351321-51351396)
chr3 (9-72)||(12086730-12086793)
chr3 (9-60)||(30082946-30082997)
chr3 (6-63)||(46093525-46093582)
chr3 (6-58)||(23631922-23631973)
chr3 (4-63)||(21813119-21813178)
chr3 (9-115)||(39551823-39551928)
chr3 (34-87)||(25753546-25753598)
chr3 (9-102)||(48811336-48811428)
chr3 (39-115)||(40673467-40673543)
[»] chr2 (21 HSPs)
chr2 (30-179)||(19890177-19890326)
chr2 (6-175)||(1334848-1335017)
chr2 (10-75)||(19514944-19515008)
chr2 (48-114)||(7673228-7673294)
chr2 (9-115)||(31452314-31452419)
chr2 (5-115)||(41933164-41933274)
chr2 (6-107)||(15505585-15505686)
chr2 (6-115)||(31017272-31017381)
chr2 (5-115)||(34904751-34904861)
chr2 (4-115)||(29239208-29239322)
chr2 (7-42)||(18223224-18223259)
chr2 (9-72)||(28453351-28453411)
chr2 (4-115)||(34233886-34233995)
chr2 (36-115)||(37993111-37993190)
chr2 (9-115)||(13538429-13538534)
chr2 (12-45)||(36480374-36480407)
chr2 (32-115)||(9173696-9173780)
chr2 (9-184)||(4762313-4762488)
chr2 (33-115)||(22440135-22440216)
chr2 (38-115)||(20064944-20065020)
chr2 (8-109)||(40789747-40789848)
[»] chr8 (27 HSPs)
chr8 (9-115)||(27801193-27801299)
chr8 (4-175)||(42636328-42636499)
chr8 (6-103)||(2258055-2258152)
chr8 (30-115)||(1369847-1369932)
chr8 (31-115)||(33949539-33949623)
chr8 (13-115)||(4384107-4384208)
chr8 (54-148)||(167856-167950)
chr8 (9-75)||(37427264-37427329)
chr8 (9-115)||(45197410-45197516)
chr8 (5-114)||(12954762-12954871)
chr8 (9-78)||(26750620-26750689)
chr8 (32-184)||(28207588-28207741)
chr8 (9-115)||(33013078-33013183)
chr8 (33-104)||(44960507-44960577)
chr8 (9-115)||(1135194-1135300)
chr8 (30-63)||(3146125-3146158)
chr8 (9-175)||(24733145-24733310)
chr8 (32-115)||(884450-884532)
chr8 (38-109)||(12684490-12684561)
chr8 (5-115)||(9735268-9735377)
chr8 (9-55)||(29217640-29217686)
chr8 (6-115)||(3520770-3520881)
chr8 (38-115)||(24695780-24695856)
chr8 (38-115)||(35901964-35902041)
chr8 (6-63)||(43238106-43238163)
chr8 (9-53)||(16723174-16723218)
chr8 (47-115)||(33067535-33067603)
[»] chr1 (22 HSPs)
chr1 (9-115)||(6883095-6883201)
chr1 (29-175)||(4851232-4851377)
chr1 (4-173)||(45640522-45640690)
chr1 (9-115)||(2864175-2864280)
chr1 (9-115)||(43396982-43397088)
chr1 (33-175)||(39150555-39150697)
chr1 (6-80)||(14746164-14746238)
chr1 (9-115)||(38748689-38748794)
chr1 (6-115)||(47187786-47187894)
chr1 (9-109)||(44829311-44829410)
chr1 (9-56)||(34232678-34232725)
chr1 (28-115)||(42791128-42791215)
chr1 (9-115)||(3982298-3982403)
chr1 (38-115)||(32562350-32562426)
chr1 (140-179)||(4771991-4772030)
chr1 (12-43)||(7549817-7549848)
chr1 (9-72)||(14758635-14758697)
chr1 (5-114)||(31889196-31889306)
chr1 (9-60)||(36321593-36321644)
chr1 (9-75)||(7212841-7212906)
chr1 (9-115)||(44329629-44329735)
chr1 (31-115)||(44329497-44329581)
[»] chr6 (13 HSPs)
chr6 (8-115)||(7421705-7421812)
chr6 (42-175)||(3766253-3766383)
chr6 (5-115)||(17215646-17215756)
chr6 (9-107)||(23399151-23399249)
chr6 (6-104)||(30801785-30801883)
chr6 (9-114)||(32823711-32823816)
chr6 (27-115)||(31855087-31855175)
chr6 (9-75)||(19293420-19293486)
chr6 (9-107)||(2864917-2865016)
chr6 (9-102)||(4806471-4806563)
chr6 (9-91)||(13063849-13063930)
chr6 (2-43)||(7465581-7465622)
chr6 (12-44)||(3605116-3605148)
[»] scaffold0268 (1 HSPs)
scaffold0268 (9-107)||(20216-20313)
[»] scaffold0204 (1 HSPs)
scaffold0204 (34-115)||(25111-25193)
[»] scaffold1444 (1 HSPs)
scaffold1444 (6-63)||(881-938)
[»] scaffold0717 (1 HSPs)
scaffold0717 (9-45)||(4926-4962)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 9718962 - 9719059
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |||  ||| |||||||||| ||||    
T  9718962 aaatgttaacgagtgtcctcag-acactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 9719059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 179
Target Start/End: Complemental strand, 25886314 - 25886139
Alignment:
Q  4 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 103  Q
    |||| ||||||||| ||||||  |  ||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||||    
T  25886314 ttgggaaatgttaatgagtgtttttaggacactctttaaacactttaaatggtaagttttatatgaaaagttgtgtattaaatgtattgaaaattgtaat 25886215  T
Q  104 agttgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaacc 179  Q
    |||||| ||| |       ||||||  |||||| | ||| ||||| |||||||||  | |||| ||||||||||||    
T  25886214 agttgactttctaagagaataatttctaaatttaaaatgtttaaagagtaccccgaggacactagttaacaaaacc 25886139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 28770616 - 28770450
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| |  ||| |||||||||||||||| |||||||||||||||  |||||||||| |||| | |||| |||  |||||||||||||||    
T  28770616 aaatgttaacgagtgcctccggaacactctttaagcactctaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttg 28770517  T
Q  109 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    | ||||        |||||   || |||| |||||||||| ||| ||||||||||||||||||||||    
T  28770516 acttttcaaaagaataattactaattttgggatgcttaaagagtgccccggaggcactcgttaacaa 28770450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 27123412 - 27123247
Alignment:
Q  10 aatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttga 109  Q
    |||||||||||||| || |||| ||||||||||||||||||||| |||||||||  | |||||||| |||| | |||| |||  ||||||||||||||||    
T  27123412 aatgttaacgagtgcccccggggcactctttaagcactttaaatggtaagtttttaacgaaaagttgtgtacttaatgcattggaaattgtaatagttga 27123313  T
Q  110 atttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
     |||||       | |||   ||||||| |||||||||| ||| |||||| |||||||||||||||    
T  27123312 ctttttaaaagaatgattactaaatttgggatgcttaaagagtgccccgggggcactcgttaacaa 27123247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 35496540 - 35496646
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| || |||| |||||||||| |||||||||| |||||||||  ||||||| || |||||| |||| ||| ||||||||||||||||    
T  35496540 aaatgttaacgagtgcccccggggcactctttaaacactttaaatggtaagtttttaatgaaaaattgtgtaatgaatgcattgaaaattgtaatagttg 35496639  T
Q  109 aattttt 115  Q
    | |||||    
T  35496640 acttttt 35496646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 39320949 - 39321055
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||||| | | ||||||||||||||||||||| ||||||||||| ||| ||||||| |||| | |||  ||| ||||||||||||||||    
T  39320949 aaatgttaacgagtgtctttgagacactctttaagcactttaattagtaagttttttattaaaagttgtgtattgaatacattgaaaattgtaatagttg 39321048  T
Q  109 aattttt 115  Q
    | |||||    
T  39321049 acttttt 39321055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 43234928 - 43234831
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||  ||||||||||||||| | |||||| |  ||||||||||||||    
T  43234928 aaatgttaacgagtgccctcggg-cactctttaagcactttaaatagtaaatttttaatgaaaagttatgtattgaatgtaatggaaattgtaatagtt 43234831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 7653718 - 7653609
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 105  Q
    |||||||||||||||||   | ||||||||||||||||||||||||| ||||||||||  |||||||||| |||||| |||| |||  ||||| ||||||    
T  7653718 ggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaagtaagtttttaatgaaaagttgtgtaatgaatgaattggaaattataatag 7653619  T
Q  106 ttgaattttt 115  Q
    |||| |||||    
T  7653618 ttgacttttt 7653609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 44537480 - 44537409
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgta 80  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||||||||||  |||||||||||||||    
T  44537480 aaatgttaacgagtgcccccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttatgta 44537409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 14651357 - 14651457
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||  |||||||||| |||||| | || |||  ||||||||| |||||    
T  14651357 aaatgttaacgagtgccctcggggcactctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtaatgattgcattggaaattgtaacagttg 14651456  T
Q  109 a 109  Q
    |    
T  14651457 a 14651457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 28663106 - 28663212
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||| || |  |||| ||||||||||||||||||||||||||| |||  ||||||| || |||| | |||| ||| ||||||||||||||||    
T  28663106 aaatgttaacgaatgcctccggggcactctttaagcactttaaatagtaaggttttaatgaaaaattgtgtattgaatgcattgaaaattgtaatagttg 28663205  T
Q  109 aattttt 115  Q
    | |||||    
T  28663206 acttttt 28663212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 35731425 - 35731320
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| || |||| ||||||||||||||||||| ||||||||| | ||| ||||||| |||| ||| || |||  |||||||||||||||    
T  35731425 aaatgttaacgagtgcccccggg-cactctttaagcactttaattagtaagttctttataaaaagttgtgtattaagtgcattggaaattgtaatagttg 35731327  T
Q  109 aattttt 115  Q
    | |||||    
T  35731326 acttttt 35731320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 10200707 - 10200602
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| | ||  |||||||||||||||||||||||  |||||||| |||  ||||||||||| | |||| |||| |||||||||  ||||    
T  10200707 aaatgttaacgagtgccttcatgacactctttaagcactttaaatgataagtttt-tatagaaagttatgtatttaatgcatttgaaattgtaacggttg 10200609  T
Q  109 aattttt 115  Q
    | |||||    
T  10200608 acttttt 10200602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 21727373 - 21727539
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| | | ||| |||||||||||||||| ||||  ||||||||  || || | || |||| | ||||||||  |||||||||||||||    
T  21727373 aaatgttaacgagtgcctttggggcactctttaagcacttcaaatgataagtttttaataaatatttgtgtattgaatgtattggaaattgtaatagttg 21727472  T
Q  109 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    | |||||       |||||   ||||| |||||||||||| | | ||||||||| | ||||||||||    
T  21727473 actttttaaaagaataattactaaattggagatgcttaaagaatgccccggaggtattcgttaacaa 21727539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 31902714 - 31902816
Alignment:
Q  5 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    ||||||||||||||||||| || || | ||||||||||| |||||||||||||| |||| |||| ||| || |||| | |||||||| ||||||| ||||    
T  31902714 tggaaaatgttaacgagtgcccccgag-cactctttaaggactttaaatagtaaatttt-tatggaaaattgtgtagtcaatgtattgaaaattgaaata 31902811  T
Q  105 gttga 109  Q
     ||||    
T  31902812 tttga 31902816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 35923474 - 35923542
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttat 77  Q
    |||||||||||||||||  ||| ||||||||||| ||||||||||| ||||||||   |||||||||||    
T  35923474 aaatgttaacgagtgtctccggaacactctttaaacactttaaataataagtttttattgaaaagttat 35923542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 42936143 - 42936040
Alignment:
Q  8 aaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||||||||||||||||  ||||| || ||||||  |||||||||||| |||||||| ||||||| || |||| |||||| ||| ||| |||||||||||    
T  42936143 aaaatgttaacgagtgt--tcggggcattctttatacactttaaatagcaagtttta-atgaaaaattgtgtattaaatgcattgaaa-ttgtaatagtt 42936048  T
Q  108 gaattttt 115  Q
    || |||||    
T  42936047 gatttttt 42936040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 3693017 - 3692910
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaag-ttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||||||||   |||| ||||||||||| | ||||| ||||||| |||| |||||||| || |||| | | || |||  ||||||||||||||    
T  3693017 aaatgttaacgagtgtttccggggcactctttaagtattttaattagtaagtttttttatgaaaaattgtgtattgagtgcattggaaattgtaatagtt 3692918  T
Q  108 gaattttt 115  Q
    || |||||    
T  3692917 gatttttt 3692910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 43224081 - 43224160
Alignment:
Q  36 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||||||||||| |||||||  |||||||||| |||| || ||  |||  ||||||||| |||||| |||||    
T  43224081 tctttaagcactttaaatagcaagtttttaatgaaaagttgtgtattacatacattggaaattgtaacagttgacttttt 43224160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 8920670 - 8920748
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatg 87  Q
    ||||||||||||||| ||  ||| |||||||||||  |||||||  |||| |||| | |||||||||||||||| ||||    
T  8920670 aaatgttaacgagtggccctggggcactctttaagacctttaaaaggtaatttttttttgaaaagttatgtaatcaatg 8920748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 2347530 - 2347450
Alignment:
Q  34 actctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||||||||||| || |||||||| |||| ||| |||| ||||||||| |||| ||| ||| |||||||| |||| |||||    
T  2347530 actctttaagcacctttaatagtaaatttt-tattaaaatttatgtaatcaatgcattgaaatttgtaatatttgatttttt 2347450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 17473187 - 17473130
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 63  Q
    ||||||||||||| ||||||| |  ||||||| |||||||||||||||  ||||||||    
T  17473187 ggaaaatgttaacaagtgtcccctagacactccttaagcactttaaatgataagtttt 17473130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 17580027 - 17580084
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 63  Q
    ||||||||||||| ||||||| |  ||||||| |||||||||||||||  ||||||||    
T  17580027 ggaaaatgttaacaagtgtcccctagacactccttaagcactttaaatgataagtttt 17580084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 27337791 - 27337730
Alignment:
Q  54 agtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||| ||||||||||| |||| | ||||||||  ||| |||||||||||| |||||    
T  27337791 agtaagttttttatgaaaagttgtgtatttaatgtattgtaaactgtaatagttgatttttt 27337730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 43996327 - 43996360
Alignment:
Q  12 tgttaacgagtgtcctcgggacactctttaagca 45  Q
    |||||||||||||| |||||||||||||||||||    
T  43996327 tgttaacgagtgtcatcgggacactctttaagca 43996360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 48488147 - 48488216
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgta 80  Q
    ||||||||||||||||||||| || |    ||||||||||||||||||  ||||||||  |||||||||||||||    
T  48488147 ggaaaatgttaacgagtgtcc-cgag----tctttaagcactttaaatgataagtttttaatgaaaagttatgta 48488216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 13585229 - 13585326
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |||  ||| |||||||||| ||||    
T  13585229 aaatgttaacgagtgtcctcag-acactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 13585326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 8261247 - 8261141
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||||   ||| ||||||| |||||||||||||||||||||||  ||||||||||||||| |||||| ||| |||||||||| |||||    
T  8261247 aaatgttaacgagtgtctctggggcactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttg 8261148  T
Q  109 aattttt 115  Q
    | |||||    
T  8261147 acttttt 8261141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 8274664 - 8274558
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||||   ||| ||||||| |||||||||||||||||||||||  ||||||||||||||| |||||| ||| |||||||||| |||||    
T  8274664 aaatgttaacgagtgtctctggggcactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagttg 8274565  T
Q  109 aattttt 115  Q
    | |||||    
T  8274564 acttttt 8274558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 24175366 - 24175464
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||||||||  |||| ||||||| ||||||||||||||||||||| ||||||||| || |||||||| |||| |||||| |||||||||||||||||||    
T  24175366 aaatgttaagaagtgccctcggggcactctttaagcactttaaatggtaagttttgtacgaaaagttgtgtattaaatgcatttaaaattgtaatagtt 24175464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 7852511 - 7852609
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||| |||||||||| |  |||| |||||||||||||||||||||||||||||||  |||||||||| |||| |||||| ||| |||||||||||||||    
T  7852511 aaatattaacgagtgccaccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaatagtt 7852609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 47995701 - 47995799
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    ||||||||||||| |||||||  | ||| ||||||||||||||||||| |||||||||  ||||||||||||||| | |||| ||| ||||||||||||    
T  47995701 ggaaaatgttaacaagtgtccctgagactctctttaagcactttaaattgtaagtttttaatgaaaagttatgtattgaatgcattgaaaattgtaata 47995799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 45900116 - 45900282
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| ||  ||| ||||||||||||||||||| |||||||||| |||||||||||| |||| | |||| |||  ||||||| |||||||    
T  45900116 aaatgttaacgagtgccccgggggcactctttaagcactttaattagtaagtttcatatgaaaagttgtgtattgaatgcattggaaattgtgatagttg 45900215  T
Q  109 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    | ||| |       |||||   ||||||  |||||||||| ||| || ||| |||||||||||||||    
T  45900216 actttataaaagaataattgctaaatttaggatgcttaaagagtgcctcgggggcactcgttaacaa 45900282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 7444352 - 7444458
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||  | || |||||||||||| ||||||||||| ||||||||  | |||||||| |||| | |||| ||| ||||||||||||||||    
T  7444352 aaatgttaacgagtgctcccgagacactctttaaacactttaaatactaagtttttaaagaaaagttgtgtattgaatgcattgaaaattgtaatagttg 7444451  T
Q  109 aattttt 115  Q
    | |||||    
T  7444452 acttttt 7444458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 24396325 - 24396123
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||   |||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||        ||||||||||| ||     
T  24396325 aaatgttaaccgatgtcttcgtgacactctttaagtactttaaatggtaagttttatatgaaaagttatgtaatgaa-------gaaattgtaataatta 24396233  T
Q  109 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaaccattttctattatgtcgtactacatatgat 208  Q
      |||||       ||||||| |||||| | ||||||||| |||  ||||||  ||||  ||||||| |   ||||||||| ||||||| ||||||||||    
T  24396232 cctttttaaaagaataattttcaaatttaaaatgcttaaaaagtgtcccggaaacactgattaacaagattcttttctattttgtcgtattacatatgat 24396133  T
Q  209 tttaaccatc 218  Q
    ||||||||||    
T  24396132 tttaaccatc 24396123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 41462187 - 41462082
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| | ||| | ||||||||||||| |||||||||||||||||  ||||||| ||||||| |||||| ||   |||||||||||||||    
T  41462187 aaatgttaacgagtgccttcgag-cactctttaagcattttaaatagtaagtttttaatgaaaaattatgtattaaatgcataagaaattgtaatagttg 41462089  T
Q  109 aattttt 115  Q
    | |||||    
T  41462088 acttttt 41462082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 51835053 - 51834947
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||| | || |||||||||||| ||||||||||||||| ||||  |||||||||| |||| | |||| |||  ||||| |||||||||    
T  51835053 aaatgttaacgagtgttcccgagacactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagttg 51834954  T
Q  109 aattttt 115  Q
    | |||||    
T  51834953 acttttt 51834947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 175
Target Start/End: Complemental strand, 8297983 - 8297844
Alignment:
Q  36 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatt 135  Q
    ||||||||||||||||||||||||||||  ||||||| || |||| | |||| |||  ||||||||| ||||||  ||||       |||||   |||||    
T  8297983 tctttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgcattggaaattgtaacagttgacattttaaaagaataattactaaatt 8297884  T
Q  136 tgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    || |||||||||| ||| |||||| |||||||||||||||    
T  8297883 tgggatgcttaaagagtgccccgggggcactcgttaacaa 8297844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 31690520 - 31690415
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| |||||| |||||| |||| ||||||||||||||| |||  ||||||||||| |||| | |||| ||| ||||||| || |||||    
T  31690520 aaatgttaacgagtgccctcgg-acactccttaaacactttaaatagtaaatttcttatgaaaagttgtgtattcaatgcattgaaaattgcaacagttg 31690422  T
Q  109 aattttt 115  Q
    | |||||    
T  31690421 acttttt 31690415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 50341834 - 50341940
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||| |||||  |||||  ||||||||||||||||| ||||||| ||||| |||||||||| |||| | ||||  ||  |||||||||||||||    
T  50341834 aaatgttaacaagtgttttcggggtactctttaagcactttatatagtaaattttaaatgaaaagttgtgtattgaatgcgttggaaattgtaatagttg 50341933  T
Q  109 aattttt 115  Q
    | |||||    
T  50341934 acttttt 50341940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 31429387 - 31429310
Alignment:
Q  38 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||||| |||||||||||| |||||||||| |||| | |||| |||  |||||||||||||||| |||||    
T  31429387 tttaagcactttaattagtaagttttaaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgatttttt 31429310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 23605634 - 23605705
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgta 80  Q
    |||||||||||||||||  ||||| ||| |||||||||||||||| |||||||||  |||||||||| ||||    
T  23605634 aaatgttaacgagtgtctccgggatactttttaagcactttaaatggtaagtttttaatgaaaagttgtgta 23605705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 24229609 - 24229704
Alignment:
Q  5 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgt 100  Q
    ||||||||||||||| |||  | || ||||||||||||||||||||||||  |||||||  ||||||| || |||| |||||| ||| ||||||||    
T  24229609 tggaaaatgttaacgggtgctcccgagacactctttaagcactttaaataaaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgt 24229704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 37440965 - 37440859
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| ||| | ||||||||||||| ||||||||| |||| |||   ||||||| ||||||| | ||   ||| ||||||||||||||||    
T  37440965 aaatgttaacgagtgcccttgagacactctttaagtactttaaatggtaaatttataatgaaaaattatgtattgaacacattgaaaattgtaatagttg 37440866  T
Q  109 aattttt 115  Q
    | |||||    
T  37440865 acttttt 37440859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 99
Target Start/End: Complemental strand, 40252796 - 40252705
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattg 99  Q
    ||||||||||||||||||||  |||| ||||  ||||| |||||||||||||| |||| |||| |||||| |||||| |||||||| |||||||    
T  40252796 ggaaaatgttaacgagtgtctccggggcactggttaaggactttaaatagtaaatttt-tatg-aaagttgtgtaatcaatgtattgaaaattg 40252705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 50427131 - 50427023
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 105  Q
    |||||||||||||||||| ||  | | |||||||||| ||||||||||||||| ||||  |||||||||| |||  | | || |||  ||||||||||||    
T  50427131 ggaaaatgttaacgagtgcccctgtggcactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtgttgattgcattggaaattgtaatag 50427032  T
Q  106 ttgaatttt 114  Q
    |||| ||||    
T  50427031 ttgactttt 50427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 107
Target Start/End: Original strand, 53014171 - 53014271
Alignment:
Q  7 gaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagt 106  Q
    ||||||||||| ||||| | |||||| | || ||||||||||||||| ||| |||||  || ||||||| |||| | ||||||||  |||||||||||||    
T  53014171 gaaaatgttaatgagtgccttcgggaaattcgttaagcactttaaatggtatgtttttaataaaaagttgtgtattgaatgtattggaaattgtaatagt 53014270  T
Q  107 t 107  Q
    |    
T  53014271 t 53014271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 35777693 - 35777764
Alignment:
Q  36 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||||||||||||||||| |||||||||  |||||||||| |||| | |||| |||  ||||||||||||||    
T  35777693 tctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattgaatgcattagaaattgtaatagtt 35777764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 39195739 - 39195794
Alignment:
Q  54 agtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttga 109  Q
    |||||||||||||||||||||| |||| | |||| ||| |||||||||||||||||    
T  39195739 agtaagttttatatgaaaagttgtgtattcaatgcattgaaaattgtaatagttga 39195794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 35180572 - 35180662
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattg 99  Q
    |||||||||||||||| | |||| |||||||||||  || ||||  |||| |||| | |||||| ||||||||| |||||||| |||||||    
T  35180572 aaatgttaacgagtgttcccggggcactctttaagacctgtaaaatgtaatttttttttgaaaaattatgtaatcaatgtattgaaaattg 35180662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 36702919 - 36702817
Alignment:
Q  9 aaatgttaacgagtgtcctc-gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    ||||||||  ||||||| || |||| | |||| ||| |||||||||||| ||    
T  36702919 aaatgttaacgagt-tcctccgggacactctttaagcactttaa----taagtttttaatgaaaaattgtgtattgaatgcattgaaaattgtaataatt 36702825  T
Q  108 gaattttt 115  Q
    || |||||    
T  36702824 gacttttt 36702817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 37060667 - 37060581
Alignment:
Q  30 ggacactctttaagcactttaaatagtaagttttatatg-aaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||||| |||||||||||||||| |||||||||  ||| |||| ||||||| ||| || ||| |||||| |||||||||| |||||    
T  37060667 ggacactttttaagcactttaaatggtaagtttttaatgaaaaaattatgtattaattgcattgaaaattataatagttgatttttt 37060581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 37138129 - 37138235
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||    |||||||||||||||||| ||||| ||| ||||| | ||||||||||| |||| | | || |||  ||||| |||||||||    
T  37138129 aaatgttaacgagtgcttccgggacactctttaagcaatttaattagaaagttctttatgaaaagttgtgtattgagtgcattggaaattataatagttg 37138228  T
Q  109 aattttt 115  Q
    | |||||    
T  37138229 acttttt 37138235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 48337671 - 48337589
Alignment:
Q  34 actctttaagcactttaaatagtaag-ttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||| ||||||||||||| |||| ||| |||| ||  ||||| |||| ||| ||||||||||||||||| |||||    
T  48337671 actctttaagcattttaaatagtaagtttttttataaaaaattgagtaatcaatgcattgaaaattgtaatagttgatttttt 48337589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 32692920 - 32693012
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaa 102  Q
    ||||||||||||||| |  |||||||||||||||| ||  | ||||||||||||| ||||||||  | |||||| |||||||| ||| ||||||    
T  32692920 aaatgttaacgagtgcctccgggacactctttaaggaccattaatagtaagtttt-tatgaaaatatgtgtaatcaatgtattgaaatttgtaa 32693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 39827114 - 39827167
Alignment:
Q  7 gaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagt 60  Q
    ||||||||||||||||||| |||||| || ||||||| ||| ||||||||||||    
T  39827114 gaaaatgttaacgagtgtcttcgggatacgctttaaggactataaatagtaagt 39827167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 54700974 - 54700934
Alignment:
Q  12 tgttaacgagtgtcctcgggacactctttaagcactttaaa 52  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  54700974 tgttaacgagtgtcatcgggacactctttaagcattttaaa 54700934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 25115231 - 25115328
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactcttt-aagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||| |||||| |||| |||||||| || |||||||||||||||||||| ||| ||||||| |||| | | || |||  ||||||||||||||    
T  25115231 aaatgttaacgtgtgtccccggg-cactcttttaaacactttaaatagtaagtttt-tataaaaagttgtgtattcactgcattggaaattgtaatagtt 25115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 27953046 - 27953173
Alignment:
Q  47 tttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatttgagatgctta 146  Q
    ||||||| |||||||||  | |||||||| |||| | |||| ||| ||||||||||||||| | |||||       ||||  |||| |||||||||||||    
T  27953046 tttaaatggtaagtttttaacgaaaagttgtgtattgaatgcattgaaaattgtaatagttaactttttaaaataataatactaaa-tttgagatgctta 27953144  T
Q  147 aatagtaccccggaggcactcgttaacaa 175  Q
    || ||| | |||||| |||||||||||||    
T  27953145 aagagtgctccggagacactcgttaacaa 27953173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 44690229 - 44690260
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactcttt 40  Q
    ||||||||||||||||||||||||||||||||    
T  44690229 aaatgttaacgagtgtcctcgggacactcttt 44690260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 7628097 - 7628016
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatt 91  Q
    ||||||||||||||| || |||| |||||||||||  |||||||  |||| |||| | |||||||||||||||  ||||||||    
T  7628097 aaatgttaacgagtgcccccggggcactctttaagacctttaaaaggtaactttt-tttgaaaagttatgtaaccaatgtatt 7628016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 11875384 - 11875440
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 63  Q
    |||||||||||||||||||||  | ||||||||||||| ||||||||| |||| ||||    
T  11875384 ggaaaatgttaacgagtgtccctgagacactctttaag-actttaaatggtaattttt 11875440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 62492 - 62658
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||||  ||||  ||||||||||||||||||||||||||||||  || |||| ||||||| | |||| ||| ||||| ||||||||||    
T  62492 aaatgttaacgagtgtctccggggtactctttaagcactttaaatagtaagtttttaataaaaaattatgtattgaatgcattgaaaatcgtaatagttg 62591  T
Q  109 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    | |||||       |||||   |||| ||||||||||||| ||||||| |||| |||||||||||||    
T  62592 actttttaaaagaataattactaaatatgagatgcttaaagagtaccctggagacactcgttaacaa 62658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 172
Target Start/End: Original strand, 16667259 - 16667422
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||||  | | ||||| ||||||||||||||||||||||||||  ||||||| || |||| | ||||||||  ||||||||||| |||    
T  16667259 aaatgttaacgagtgtctccagaacactttttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgtattggaaattgtaataattg 16667358  T
Q  109 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaa 172  Q
    | |||||       ||||| | ||||||| |||||||||| ||| |||||||||||||| ||||    
T  16667359 actttttaaaagaataattattaaatttgtgatgcttaaagagtgccccggaggcactctttaa 16667422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 3140957 - 3140847
Alignment:
Q  5 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    ||||||||||||| |||||| | |||||||| |||||| ||||||||||| ||||||||| || ||||||| | || |||||| ||| ||||||||||||    
T  3140957 tggaaaatgttaatgagtgttcccgggacacactttaaacactttaaataataagttttaaataaaaagttgtatattaaatgaattgaaaattgtaata 3140858  T
Q  105 gttgaattttt 115  Q
    ||||| |||||    
T  3140857 gttgacttttt 3140847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 30501106 - 30501273
Alignment:
Q  9 aaatgttaacgagtgtcctc-gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||||||| || | ||| ||||  |||||||||||||||||||||||||| |||||||||| |||| | ||||||||  ||||||||||| ||    
T  30501106 aaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataatt 30501205  T
Q  108 gaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    || |||||       |||||   ||||||| |||||||||| ||| ||| || |||||||||||||||    
T  30501206 gactttttaaaagaataattactaaatttgggatgcttaaagagtgccctgggggcactcgttaacaa 30501273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 30541449 - 30541616
Alignment:
Q  9 aaatgttaacgagtgtcctc-gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||||||| || | ||| ||||  |||||||||||||||||||||||||| |||||||||| |||| | ||||||||  ||||||||||| ||    
T  30541449 aaatgttaacgagtgccccccggggcacttgttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataatt 30541548  T
Q  108 gaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    || |||||       |||||   ||||||| |||||||||| ||| ||| || |||||||||||||||    
T  30541549 gactttttaaaagaataattactaaatttgggatgcttaaagagtgccctgggggcactcgttaacaa 30541616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 2918562 - 2918734
Alignment:
Q  8 aaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagt-aagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagt 106  Q
    ||||||||||||||| ||||  || ||||||||||||| ||||||| || || ||||  |||||||||| |||| |||||| |||  ||||| |||||||    
T  2918562 aaaatgttaacgagtatccttagggcactctttaagcattttaaattgtaaaatttttaatgaaaagttgtgtattaaatgcattggaaattataatagt 2918661  T
Q  107 tgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaacc 179  Q
    |||  ||||       ||||| | |||||||| ||||||||| ||||||||  ||||||||||||||||||||    
T  2918662 tgacatttttaaaaaataattattaaatttgaaatgcttaaagagtaccccaaaggcactcgttaacaaaacc 2918734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 9276573 - 9276653
Alignment:
Q  35 ctctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| | |||| ||| |||||| |||||||||| |||||    
T  9276573 ctctttaagcactttaaatagtaagtttttaatgaaaagttatgtattgaatgcattgaaaattataatagttgatttttt 9276653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 7719322 - 7719180
Alignment:
Q  30 ggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaatttt 129  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||| |||| | ||| ||||  |||||||||||||||| |||||       |||||||    
T  7719322 ggacactttttaagcactttaaataataagtttttaatgaaaagttgtgtattgaatatattggaaattgtaatagttgattttttaaaagaataatttt 7719223  T
Q  130 aaaatttgagatgcttaaatagtaccccggaggcactcgttaa 172  Q
     |||| ||  ||||||||| |||  ||||| ||||||||||||    
T  7719222 taaatatggtatgcttaaagagtgtcccgggggcactcgttaa 7719180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 8208293 - 8208212
Alignment:
Q  34 actctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||||||| ||| ||||||  ||||||||||||||||||||||||||| |||| ||| |||||||||||| |||| |||||    
T  8208293 actctttaaacacattaaatgataagttttatatgaaaagttatgtaatgaatgcattaaaaattgtaataattgacttttt 8208212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 34899127 - 34899198
Alignment:
Q  33 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| || |||||| |||  |||||||||||    
T  34899127 cactctttaaacactttaaatagtaagttttaaatgaaaagttatatattaaatgcattagaaattgtaata 34899198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 17692400 - 17692295
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| || ||||  ||||||||||||||| |||||||| |||||  |||||||||| |||| ||| || ||| |||||||||| |||||    
T  17692400 aaatgttaacgagtgcccccgggt-actctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtagtaattgcattgaaaattgtaacagttg 17692302  T
Q  109 aattttt 115  Q
    | |||||    
T  17692301 acttttt 17692295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 18229569 - 18229667
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||||||||||||||    |||||||||||||||||||||||||| |||||||||  ||||||| || | || | ||||||||  ||||||||||||||    
T  18229569 aaatgttaacgagtgcttccgggacactctttaagcactttaaatggtaagtttttaatgaaaaattgtttattgaatgtattggaaattgtaatagtt 18229667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 7968510 - 7968451
Alignment:
Q  28 cgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatg 87  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||| |||| ||||||    
T  7968510 cggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatg 7968451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 24041030 - 24041155
Alignment:
Q  48 ttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatttgagatgcttaa 147  Q
    ||||||||||| |||| |||||||||||||||| | ||||||||  |||||  | || ||||||||||       |||||| | ||||||| ||||||||    
T  24041030 ttaaatagtaactttt-tatgaaaagttatgtatttaatgtattggaaattaaactatttgaattttttaaagaataatttcataatttgatatgcttaa 24041128  T
Q  148 atagtaccccggaggcactcgttaacaa 175  Q
    | ||||||||||| ||||||||||||||    
T  24041129 agagtaccccgga-gcactcgttaacaa 24041155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 39558734 - 39558840
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||||| ||||  ||||  ||||||| |||||||||||||||||   ||||||||  ||||  ||||| |||  ||||||||| |||||    
T  39558734 aaatgttaacgagtgtcttcggagcacttcttaagcattttaaatagtaagtttttattgaaaagtcgtgtatcaaatgcattggaaattgtaacagttg 39558833  T
Q  109 aattttt 115  Q
    |||||||    
T  39558834 aattttt 39558840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 115
Target Start/End: Complemental strand, 8221264 - 8221155
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 105  Q
    |||||||||||| |||||||  |||  || |||||||||| |||||||||||||||||  || |||| || |||| | |||| ||| ||| |||||||||    
T  8221264 ggaaaatgttaatgagtgtctccggagcattctttaagcattttaaatagtaagtttttaataaaaaattgtgtattgaatgcattgaaagttgtaatag 8221165  T
Q  106 ttgaattttt 115  Q
    |||| |||||    
T  8221164 ttgacttttt 8221155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 14043491 - 14043414
Alignment:
Q  38 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||| |||||||| |||||||||||| |||| || |||| |||||||| | |||||||| |||||||| |||||    
T  14043491 tttaagcattttaaatattaagttttatataaaaaattgtgtattaaatgtaatgaaaattgtgatagttgacttttt 14043414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 15720204 - 15720100
Alignment:
Q  10 aatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttga 109  Q
    |||||||||||| |||| | | ||||||||||| |||||||| ||||||||| | ||||||||||| |||| ||| |  |||  ||||||||||||||||    
T  15720204 aatgttaacgagcgtcc-cagtacactctttaaacactttaattagtaagttctttatgaaaagttgtgtattaagttcattggaaattgtaatagttga 15720106  T
Q  110 attttt 115  Q
     |||||    
T  15720105 cttttt 15720100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 114
Target Start/End: Original strand, 112450 - 112558
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 105  Q
    ||||| |||||||||||| ||  ||||||||||||||||||||||||||  || ||||  ||||||| || |||| |||||  ||| |||||||||  ||    
T  112450 ggaaactgttaacgagtgccccggggacactctttaagcactttaaataacaaatttttaatgaaaaattgtgtattaaatacattgaaaattgtatcag 112549  T
Q  106 ttgaatttt 114  Q
    |||| ||||    
T  112550 ttgactttt 112558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 23117221 - 23117288
Alignment:
Q  36 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 103  Q
    ||||||| || |||||||||||||||||  ||||||| ||||||| ||||||||||  ||||||||||    
T  23117221 tctttaatcattttaaatagtaagtttttaatgaaaaattatgtattaaatgtattggaaattgtaat 23117288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 31557994 - 31558099
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||||   |||||||||  |||||||| || |||| ||| |||| |||||||| |||| ||||||||||||| ||| |||||| | |||    
T  31557994 aaatgttaacgagtgtttacgggacacttattaagcacctttaataataaatttt-tatgaaaatttatataataaatgtattgaaatttgtaacatttg 31558092  T
Q  109 aattttt 115  Q
    | |||||    
T  31558093 atttttt 31558099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 40530128 - 40530176
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagta 57  Q
    ||||||||||||||| ||| | |||||| ||||||||||||||||||||    
T  40530128 aaatgttaacgagtgcccttgagacactttttaagcactttaaatagta 40530176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 26900014 - 26900096
Alignment:
Q  33 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  26900014 cactctttaaacactttaaatggtaaattttatatgaaaagttatgtaataaatgcattgaaaattgtaatagttgacttttt 26900096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 48180138 - 48180304
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||| | ||  ||| ||||||||| | |||||||||||||||||||| ||||||| |||  ||||  |||| |||  |||||||||||||||    
T  48180138 aaatgttaacgaatatctccggaacactcttttatcactttaaatagtaagttttttatgaaatgttgggtaaccaatgcattggaaattgtaatagttg 48180237  T
Q  109 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    | |||||       ||||| | ||||| | |||||||||| |||  ||||||| |||||||||||||    
T  48180238 actttttaaaagaataattgttaaattggggatgcttaaagagtgtcccggagacactcgttaacaa 48180304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 29083866 - 29083965
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaa-tagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||||||| |  | ||| ||||||||||||||||||| |||||||||||   ||||||||| |||| |||||| ||| |||||||||||||||    
T  29083866 aaatgttaacgagtgcctccaggatactctttaagcactttaaaatagtaagtttttattgaaaagttgtgtattaaatgcattaaaaattgtaatagtt 29083965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 24791637 - 24791529
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagta---agttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 105  Q
    ||||||||||||||| ||||  ||||||||||||  |||||||||||||   ||||||  ||||||||||||||| | |||  ||| |||||||||||||    
T  24791637 aaatgttaacgagtg-cctccagacactctttaaatactttaaatagtactaagtttttaatgaaaagttatgtattgaatacattgaaaattgtaatag 24791539  T
Q  106 ttgaattttt 115  Q
    |||| |||||    
T  24791538 ttgacttttt 24791529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 45529082 - 45529164
Alignment:
Q  4 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatg 87  Q
    |||| ||||||||||||||| || ||||| |||||||||||||  | ||||||||||||| |||||||| ||||||||| ||||    
T  45529082 ttgggaaatgttaacgagtgcccccgggatactctttaagcacccttaatagtaagtttt-tatgaaaatttatgtaatcaatg 45529164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 51351396 - 51351321
Alignment:
Q  29 gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| || |||| ||||||||||  ||||| |||||    
T  51351396 gggacactctttaagcactttaaaaagtaagtttttaatgaaaaattgtgtattaaatgtattggaaattataata 51351321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 12086730 - 12086793
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaa 72  Q
    ||||||||||||||| |||||||||||| |||||| |||  ||||||||||||||  |||||||    
T  12086730 aaatgttaacgagtgccctcgggacactatttaagtactcgaaatagtaagtttttaatgaaaa 12086793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 30082997 - 30082946
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagt 60  Q
    ||||||||||||||||| |||||||||||||||||  || ||||||||||||    
T  30082997 aaatgttaacgagtgtcttcgggacactctttaagacctataaatagtaagt 30082946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 46093525 - 46093582
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 63  Q
    |||||||||||||||||| |  ||||  |||||||||| |||||||||||||||||||    
T  46093525 ggaaaatgttaacgagtgcctccggggtactctttaagaactttaaatagtaagtttt 46093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 23631922 - 23631973
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaa 58  Q
    ||||||||||||||||||||| | | |||||||||||||||||| ||||||||    
T  23631922 ggaaaatgttaacgagtgtccccag-acactctttaagcacttttaatagtaa 23631973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 21813119 - 21813178
Alignment:
Q  4 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 63  Q
    |||||||||||||| |||||||||  || ||||||||||| | |||||||||||| ||||    
T  21813119 ttggaaaatgttaatgagtgtcctaagggcactctttaaggattttaaatagtaaatttt 21813178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 39551823 - 39551928
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||   || ||  ||||||||| |||||||| ||||||||| | ||||||||||| | || | | |||||| |||||||| |||||||    
T  39551823 aaatgttaacgagtgctttcagggtactctttaaacactttaattagtaagttctttatgaaaagttgtttattgagtgtattgaaaattgt-atagttg 39551921  T
Q  109 aattttt 115  Q
    | |||||    
T  39551922 atttttt 39551928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 25753598 - 25753546
Alignment:
Q  34 actctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatg 87  Q
    ||||||||||||| || ||||||||||||| |||||||| ||||||||| ||||    
T  25753598 actctttaagcacctttaatagtaagtttt-tatgaaaatttatgtaattaatg 25753546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 48811336 - 48811428
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaa 102  Q
    |||||||||||||||||  || |  |||||||||  ||||| ||||||||||||| |||||||| || |||||| |||| ||| ||| ||||||    
T  48811336 aaatgttaacgagtgtctccgaggtactctttaaaaacttttaatagtaagtttt-tatgaaaaattgtgtaatcaatgcattgaaatttgtaa 48811428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 40673543 - 40673467
Alignment:
Q  39 ttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||||||  ||||||||  | |||||||  |||| | ||| ||||  ||||||||||||||||||||||    
T  40673543 ttaagcactttaaatgataagtttttaaagaaaagtagtgtattgaatatattagaaattgtaatagttgaattttt 40673467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 19890177 - 19890326
Alignment:
Q  30 ggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaatttt 129  Q
    ||||| ||||||||||||| ||||| ||||||||  |||||||||| |||| |||||| |||  |||||||||||||||| |||||       |||||      
T  19890177 ggacattctttaagcacttaaaataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttgactttttaaaagaataattac 19890276  T
Q  130 aaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaacc 179  Q
     ||||||  ||||||||||||||||||||||  |||||||||||||||||    
T  19890277 taaatttaggatgcttaaatagtaccccggaaacactcgttaacaaaacc 19890326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 1334848 - 1335017
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 105  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||||||  ||||||||  ||||||| || | || | |||| |||  ||||||||||||    
T  1334848 ggaaaatgttaacgattgtccccggagcactctttaagcactttaaatgataagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatag 1334947  T
Q  106 ttgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    |||| |||||       ||||| | ||||||| |||||||||| ||| ||||||||  ||||||||||||    
T  1334948 ttgatttttttaaagaataattattaaatttgggatgcttaaagagtgccccggagatactcgttaacaa 1335017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 19515008 - 19514944
Alignment:
Q  10 aatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagtt 75  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  19515008 aatgttaacgagtgtcctaggg-cactctttaagcactttaaattgtaagttttatatgaaaagtt 19514944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 7673294 - 7673228
Alignment:
Q  48 ttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttt 114  Q
    ||||||| |||||||||||| ||||||| |||| |||||||||| ||||||||||||||||| ||||    
T  7673294 ttaaataataagttttatataaaaagttgtgtactaaatgtattgaaaattgtaatagttgactttt 7673228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 31452314 - 31452419
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||| | ||| ||| | |||||||||||||||||||||||||| ||  ||||||| |||| | |||| ||| ||||||||||| ||||    
T  31452314 aaatgttaacgagtgttcccggaacattatttaagcactttaaatagtaagtttt-taataaaagttgtgtattgaatgcattgaaaattgtaattgttg 31452412  T
Q  109 aattttt 115  Q
    | |||||    
T  31452413 acttttt 31452419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 41933274 - 41933164
Alignment:
Q  5 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    |||||||| ||||||||||| | |||  ||||||||||||||||||| |||||| |||| ||| ||||||| | || | | || ||| ||||||||||||    
T  41933274 tggaaaatattaacgagtgttcccggagcactctttaagcactttaattagtaaattttttataaaaagttgtttactgagtgcattgaaaattgtaata 41933175  T
Q  105 gttgaattttt 115  Q
    ||||| |||||    
T  41933174 gttgacttttt 41933164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 107
Target Start/End: Complemental strand, 15505686 - 15505585
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 105  Q
    ||||||||||||||||||||   | | ||||||| || |||||||||||||||||||   |||||||||| |||| | |||||||| |||||| ||||||    
T  15505686 ggaaaatgttaacgagtgtctctgtggcactcttgaaacactttaaatagtaagtttggaatgaaaagttgtgtattgaatgtattgaaaattataatag 15505587  T
Q  106 tt 107  Q
    ||    
T  15505586 tt 15505585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 31017272 - 31017381
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 105  Q
    |||||||||||||||||| | ||||| || ||||||||||||||||||   |||||||  |||||||||| |||| |||||| ||| ||||||  ||||     
T  31017272 ggaaaatgttaacgagtgccttcggggcattctttaagcactttaaatgaaaagtttttaatgaaaagttgtgtattaaatgcattgaaaattaaaatat 31017371  T
Q  106 ttgaattttt 115  Q
    |||| |||||    
T  31017372 ttgacttttt 31017381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 34904751 - 34904861
Alignment:
Q  5 tggaaaatgttaacgagtgtcctcggga-cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 103  Q
    |||||||||| |||||||| | || ||| ||||||||||||||||||||| ||||||| |  ||||||| || |||| |||||  ||| |||||||||||    
T  34904751 tggaaaatgtcaacgagtg-cttccggagcactctttaagcactttaaattgtaagttattaatgaaaaattttgtattaaattcattaaaaattgtaat 34904849  T
Q  104 agttgaattttt 115  Q
    |||||| |||||    
T  34904850 agttgatttttt 34904861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 29239208 - 29239322
Alignment:
Q  4 ttggaaaatgttaacgagtgtcctcg---ggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgt 100  Q
    |||||||||||||| ||| |||| ||   |||||||||||||||||||||| |||||| | ||  ||||||| |  |||| | |||| ||| ||||||||    
T  29239208 ttggaaaatgttaaggagcgtccccgacgggacactctttaagcactttaattagtaaatctttaatgaaaaatggtgtattgaatgcattgaaaattgt 29239307  T
Q  101 aatagttgaattttt 115  Q
    ||||||||| |||||    
T  29239308 aatagttgacttttt 29239322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 18223259 - 18223224
Alignment:
Q  7 gaaaatgttaacgagtgtcctcgggacactctttaa 42  Q
    ||||||||||||||||||||||||||||||||||||    
T  18223259 gaaaatgttaacgagtgtcctcgggacactctttaa 18223224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 28453411 - 28453351
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaa 72  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||    
T  28453411 aaatgttaacgagtgtcct-gggacact-tttaagcacttttaatagtaagtttt-tatgaaaa 28453351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 34233886 - 34233995
Alignment:
Q  4 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 103  Q
    ||||||||||||||||||||||||   |||||||||||||||| || |||||||| |||| |||  ||| || |||||| |||| ||| ||| |||||||    
T  34233886 ttggaaaatgttaacgagtgtcct-aagacactctttaagcacctttaatagtaaatttt-tattcaaatttgtgtaatcaatgcattgaaatttgtaat 34233983  T
Q  104 agttgaattttt 115  Q
    | |||| |||||    
T  34233984 atttgacttttt 34233995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 37993190 - 37993111
Alignment:
Q  36 tctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||||| || |||||||||||| ||||  || |||| ||||||| |||||| ||| ||||||||||||||||| |||||    
T  37993190 tctttaaacattttaaatagtaaatttttaataaaaaattatgtattaaatgcattgaaaattgtaatagttgatttttt 37993111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 13538534 - 13538429
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||| |||| ||| |||||||||||||||    ||||||||||| |||| |||||||||||||||| | |||| |||  |||||| | || |||    
T  13538534 aaatgttaactagtgccctggggacactctttaagggtcttaaatagtaactttt-tatgaaaagttatgtattcaatgcattggaaattgaattatttg 13538436  T
Q  109 aattttt 115  Q
    |||||||    
T  13538435 aattttt 13538429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 36480374 - 36480407
Alignment:
Q  12 tgttaacgagtgtcctcgggacactctttaagca 45  Q
    ||||||||||||||||||||||||||||||||||    
T  36480374 tgttaacgagtgtcctcgggacactctttaagca 36480407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 9173696 - 9173780
Alignment:
Q  32 acactctttaagcactttaaatagtaagttttatatgaaaagttatgta-ataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||||||||| |||||||| ||| ||||||| |||||||| || ||||  | | |||||| ||||||||||||||||| |||||    
T  9173696 acactctttaaacactttaattagcaagttttttatgaaaaattgtgtatttgattgtattgaaaattgtaatagttgatttttt 9173780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 4762488 - 4762313
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||| ||| || | | |||| ||||| ||||||||||||||| ||||  || |||| || |||| | |||| ||| |||||| |||||||||    
T  4762488 aaatgttaacgaatgttcttgaggcactttttaatcactttaaatagtaaatttttaataaaaaattgtgtattgaatgcattgaaaattataatagttg 4762389  T
Q  109 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaaccatttt 184  Q
    | ||| |       |||||   ||||||| |||||||||| |||   ||||  |||||||||||||| ||||||||    
T  4762388 actttataaaataataattactaaatttgggatgcttaaacagtgatccgggagcactcgttaacaagaccatttt 4762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 22440135 - 22440216
Alignment:
Q  33 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||||||||| || || ||||||||||||| ||||||||  |||||||| |||| ||| ||| |||||| | ||||||||||    
T  22440135 cactctttaagtacctttaatagtaagtttt-tatgaaaatatatgtaatcaatgcattgaaacttgtaacatttgaattttt 22440216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 20065020 - 20064944
Alignment:
Q  38 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||||||||| ||| ||| |||||||| || |||| | |||  ||| ||||||||||||||||| |||||    
T  20065020 tttaagcactttaaatagaaaggttt-tatgaaaaattgtgtatttaatacattgaaaattgtaatagttgacttttt 20064944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 40789848 - 40789747
Alignment:
Q  8 aaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||||||||||    ||||||||||||||  |||||| || |||||| | |||||||| |||| || | | |||||| |||||| ||||| ||    
T  40789848 aaaatgttaacgagtgtctctaggacactctttaagtgctttaattaataagttctttatgaaaaattatctattgagtgtattgaaaattataataatt 40789749  T
Q  108 ga 109  Q
    ||    
T  40789748 ga 40789747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 27801193 - 27801299
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||  || |||  ||||||||||||||||||||||||||||||  || ||||||| |||||| |||| ||| ||||||||||||||||    
T  27801193 aaatgttaacgagtgctcttggggtactctttaagcactttaaatagtaagtttttaataaaaagttgtgtaatgaatgcattgaaaattgtaatagttg 27801292  T
Q  109 aattttt 115  Q
    | |||||    
T  27801293 acttttt 27801299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 42636328 - 42636499
Alignment:
Q  4 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 103  Q
    |||| |||||||||||||||  | |||  ||||||||||||||||||||| |||||||||  |||||||||| |||| |||||| |||  ||||||||||    
T  42636328 ttgggaaatgttaacgagtgctcccggagcactctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattgtaaattgtaat 42636427  T
Q  104 agttgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    |||||| |||||       |||||   ||||||| |||||||||| ||| ||||||  |||||| |||||||    
T  42636428 agttgacttttttgaataataattactaaatttgggatgcttaaagagtgccccgggagcactccttaacaa 42636499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 103
Target Start/End: Original strand, 2258055 - 2258152
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 103  Q
    ||||||||||| ||||||  | ||||||| |||||||||||||||||| |||||||||| |||||||||| |||| |||||  ||| |||||||||||    
T  2258055 ggaaaatgttatcgagtgcacccgggacaatctttaagcactttaaatggtaagttttaaatgaaaagttgtgtattaaatacattaaaaattgtaat 2258152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 1369847 - 1369932
Alignment:
Q  30 ggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||||||||||||| || |||||||||||||||||||||| || | |||| |||  ||||||| |||||||| |||||    
T  1369847 ggacactctttaagcactttaattaataagttttatatgaaaagttatctattgaatgcattggaaattgtgatagttgacttttt 1369932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 33949539 - 33949623
Alignment:
Q  31 gacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||| |||||||| ||||||||| | ||||||||||| |||| | | || |||| ||||||||||||||||||||||    
T  33949539 gacactctttaaacactttaattagtaagttatttatgaaaagttgtgtattgagtgcatttgaaattgtaatagttgaattttt 33949623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 4384107 - 4384208
Alignment:
Q  13 gttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatt 112  Q
    |||||||||||| ||||||||||||||||||||||||||||  ||| ||||  ||| |||||| |||| | |||| |||  |||||||||||||||| ||    
T  4384107 gttaacgagtgttctcgggacactctttaagcactttaaatgataaatttttaatg-aaagttgtgtattgaatgcattggaaattgtaatagttgattt 4384205  T
Q  113 ttt 115  Q
    |||    
T  4384206 ttt 4384208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 167856 - 167950
Alignment:
Q  54 agtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatttgagatgcttaaa 148  Q
    ||||||||||| |||||||||||||||||||||| |||  ||||| |||||||||| |||||       ||||||| ||||||||||| ||||||    
T  167856 agtaagttttaaatgaaaagttatgtaataaatgcattggaaattataatagttgactttttaaaagaataatttttaaatttgagatacttaaa 167950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 37427329 - 37427264
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagtt 75  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||  ||||||||||    
T  37427329 aaatgttaacgagtg-cctccggacactctttaagcactttaaatggtaagattttaatgaaaagtt 37427264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 45197516 - 45197410
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| |  | ||||||||||||| ||| ||||||||||| |||| |||||||||||  ||||| |||  ||| ||||||| ||| ||||    
T  45197516 aaatgttaacgagtgcctccaggacactctttaaacacattaaatagtaaattttttatgaaaagttgggtaatcaatccattgaaaattgcaattgttg 45197417  T
Q  109 aattttt 115  Q
    | |||||    
T  45197416 acttttt 45197410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 12954871 - 12954762
Alignment:
Q  5 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    |||||||||||||||||||||  || ||||||||||| | |||||||||  ||| ||||   |||||| || |||| ||||| |||| |||||| |||||    
T  12954871 tggaaaatgttaacgagtgtctccgagacactctttatgtactttaaatgataaatttttattgaaaaattgtgtattaaatctattgaaaattataata 12954772  T
Q  105 gttgaatttt 114  Q
    ||||| ||||    
T  12954771 gttgattttt 12954762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 26750689 - 26750620
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatg 78  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||||| |||  ||||||| |||||    
T  26750689 aaatgttaacgagtgcgctcggagcactctttaagcactttaaatagtaagattttaatgaaaaattatg 26750620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 28207741 - 28207588
Alignment:
Q  32 acactctttaagcac-tttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaatttta 130  Q
    ||||||||||||||| ||||||| | |||||||  |||||||||| |||| | |||| |||  |||||||||||||||| |||||       | ||| |     
T  28207741 acactctttaagcacctttaaatggaaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttgactttttaaaagaattattgtt 28207642  T
Q  131 aaatttgagatgcttaaatagtaccccggaggcactcgttaacaaaaccatttt 184  Q
    ||||||| |||||||||| |||  | ||| ||||||||||||||| ||| ||||    
T  28207641 aaatttgggatgcttaaagagtgtctcgggggcactcgttaacaagaccctttt 28207588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 33013183 - 33013078
Alignment:
Q  9 aaatgttaacgagtg-tcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||| ||||||||| | ||||||||||| |||| | | |  |||  ||||||||||||||    
T  33013183 aaatgttaacgagtgctcctggg--cactctttaagcactttaattagtaagttctttatgaaaagttgtgtattgagtacattggaaattgtaatagtt 33013086  T
Q  108 gaattttt 115  Q
    || |||||    
T  33013085 gacttttt 33013078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 44960577 - 44960507
Alignment:
Q  33 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    ||||||||||||||||| |||||||| |||| |||||||| ||||||||| |||| ||| ||| ||||||||    
T  44960577 cactctttaagcacttttaatagtaaatttt-tatgaaaatttatgtaatcaatgcattgaaatttgtaata 44960507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 1135300 - 1135194
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| | || |  |||||||||| |||||||||| |||||||||  | |||||||| | || | |||  ||| ||||||||||||||||    
T  1135300 aaatgttaacgagtgccgtcagagcactctttaaacactttaaatggtaagtttttaaggaaaagttgtatattgaatacattgaaaattgtaatagttg 1135201  T
Q  109 aattttt 115  Q
    | |||||    
T  1135200 acttttt 1135194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 3146158 - 3146125
Alignment:
Q  30 ggacactctttaagcactttaaatagtaagtttt 63  Q
    ||||||||||||||||||||||||||||||||||    
T  3146158 ggacactctttaagcactttaaatagtaagtttt 3146125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 24733310 - 24733145
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||||  |||| ||||||||||| || || ||||||||||||| ||| |||| || |||||| |||| | |  || |||||| | |||    
T  24733310 aaatgttaacgagtgtctccggggcactctttaagtacctttaatagtaagtttt-tataaaaatttgtgtaatcaatgcactgtaatttgtaacatttg 24733212  T
Q  109 aatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    | |||||       || |||| ||||||| ||| |||||| |||| ||||| | |||||||||||||    
T  24733211 acttttttagagaatattttttaaatttgggatccttaaagagtatcccggggacactcgttaacaa 24733145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 884532 - 884450
Alignment:
Q  32 acactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||||||||||||| | |||||||  ||||||| || |||| |||||  ||| |||||||||||| |||| |||||    
T  884532 acactctttaagcactttaaattgaaagtttttaatgaaaaattgtgtattaaat-cattgaaaattgtaataattgatttttt 884450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 12684490 - 12684561
Alignment:
Q  38 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttga 109  Q
    ||||||||||||||||| ||| ||||  || ||||||| |||||| |||| |||  ||||||||||||||||    
T  12684490 tttaagcactttaaataataaatttttaattaaaagttttgtaatgaatgcattagaaattgtaatagttga 12684561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 9735268 - 9735377
Alignment:
Q  5 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    ||||||||||||||||||||  ||| |||||| |||||  | |||||||  ||| ||||  |||||||||| |||| |||||||||| ||| |  |||||    
T  9735268 tggaaaatgttaacgagtgt-ttcgagacactttttaaatattttaaatgataaatttttaatgaaaagttgtgtattaaatgtattgaaagtcataata 9735366  T
Q  105 gttgaattttt 115  Q
    ||||| |||||    
T  9735367 gttgacttttt 9735377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 29217686 - 29217640
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatag 55  Q
    ||||||||||||| |||||| |||||| ||||||||||||| |||||    
T  29217686 aaatgttaacgagcgtcctccggacacactttaagcacttttaatag 29217640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 3520770 - 3520881
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaa----gttttatatgaaaagttatgtaataaatgtatttaaaattgta 101  Q
    ||||||| ||||| ||||| ||  ||||||| ||||||||||| ||||| |||    |||||  ||||||||||||||| | |||| ||| |||| ||||    
T  3520770 ggaaaatattaacaagtgttct--ggacactttttaagcacttgaaataataaataagtttttaatgaaaagttatgtattgaatgcattaaaaactgta 3520867  T
Q  102 atagttgaattttt 115  Q
    |||||||| |||||    
T  3520868 atagttgatttttt 3520881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 24695856 - 24695780
Alignment:
Q  38 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||| ||||||||||||||||||||| || ||||||| |||| | | || |||  |||||||||||||||| |||||    
T  24695856 tttaaacactttaaatagtaagtttta-ataaaaagttgtgtattcactgcattagaaattgtaatagttgacttttt 24695780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 115
Target Start/End: Complemental strand, 35902041 - 35901964
Alignment:
Q  38 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||| |||||||| ||||||||  |||||||||| |||| | |||| |||  ||||||||||| |||| |||||    
T  35902041 tttaagcattttaaataataagtttttaatgaaaagttctgtattgaatgcattggaaattgtaataattgacttttt 35901964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 43238106 - 43238163
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 63  Q
    |||||||||||||||||| |||  |  ||||||||||| |||||||||||||| ||||    
T  43238106 ggaaaatgttaacgagtgccctaagtgcactctttaagaactttaaatagtaaatttt 43238163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 16723174 - 16723218
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaat 53  Q
    ||||||||||||||| || || |||||| ||||||||||||||||    
T  16723174 aaatgttaacgagtgcccccgagacactttttaagcactttaaat 16723218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 33067603 - 33067535
Alignment:
Q  47 tttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||||||||| |||||||||| |||| | |||| |||  | ||||||||| |||| |||||    
T  33067603 tttaaatagtaagttttaaatgaaaagttttgtattgaatgcattagacattgtaataattgacttttt 33067535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 6883095 - 6883201
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| | | | || ||||||||| ||||||||||  ||| ||||||||||||||||||||||| |||| |||| |||||||||||||||    
T  6883095 aaatgttaacgagtgcctttgagatactctttaaacactttaaatgataaattttatatgaaaagttatgtaatgaatgcatttgaaattgtaatagttg 6883194  T
Q  109 aattttt 115  Q
    | |||||    
T  6883195 atttttt 6883201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 4851232 - 4851377
Alignment:
Q  29 gggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattt 128  Q
    |||| |||||||||||||||||| ||||||||| | |||||||||||  ||| ||| || |||| |||||||||||||||| |||||       ||||||    
T  4851232 gggatactctttaagcactttaattagtaagttctttatgaaaagttgggtagtaagtgcatttgaaattgtaatagttgacttttt-aaagaataattt 4851330  T
Q  129 taaaatttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    | ||| |||| ||||||||| |||  |||||||||||||||||||||    
T  4851331 ttaaaattgacatgcttaaagagtgtcccggaggcactcgttaacaa 4851377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 45640690 - 45640522
Alignment:
Q  4 ttggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaat 103  Q
    |||| |||||||||||||||||| || ||||||||||||||| |||||||||||||||||  ||||||| || |||||| |||| ||| |||||| ||||    
T  45640690 ttgggaaatgttaacgagtgtccccgagacactctttaagcattttaaatagtaagtttttgatgaaaa-ttgtgtaatgaatgcattgaaaattataat 45640592  T
Q  104 agttgaatttttnnnnnnntaattttaaaatttgagatgcttaaatagtaccccggaggcactcgttaac 173  Q
    | |||| |||||       || || | ||||||| ||||||| || |||  ||||||| |||||||||||    
T  45640591 aattgactttttgaaagaatagttcttaaatttgggatgctttaaaagtgtcccggagacactcgttaac 45640522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 2864280 - 2864175
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| || |||  |||||||||||||||||||||||||||||||  |||||||||| |||| | |||| |||  |||||||||||||||    
T  2864280 aaatgttaacgagtgccc-cggagcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttg 2864182  T
Q  109 aattttt 115  Q
    | |||||    
T  2864181 acttttt 2864175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 43396982 - 43397088
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| ||||||  ||||| |||| ||||||||||||||||||||  |||||||||| |||| |||||| |||  ||||| |||||||||    
T  43396982 aaatgttaacgagtgccctcggcgcactcgttaaacactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattggaaattataatagttg 43397081  T
Q  109 aattttt 115  Q
    | |||||    
T  43397082 acttttt 43397088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 39150697 - 39150555
Alignment:
Q  33 cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaa 132  Q
    ||||||||||||||||||| ||||||| |||  ||||||| ||||||| | |||| |||  |||||||||||||||| |||||       |||||   ||    
T  39150697 cactctttaagcactttaactagtaagattttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttgactttttacaagaataattactaa 39150598  T
Q  133 atttgagatgcttaaatagtaccccggaggcactcgttaacaa 175  Q
    ||||  |||||||||| ||| |||||| |||||||||||||||    
T  39150597 atttaggatgcttaaagagtgccccgggggcactcgttaacaa 39150555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 14746164 - 14746238
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgta 80  Q
    |||||||||||||||||| || || | ||||||| ||||||||||| ||||||||| ||||||||||||| ||||    
T  14746164 ggaaaatgttaacgagtgcccccgaggcactcttcaagcactttaattagtaagttctatatgaaaagttgtgta 14746238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 38748689 - 38748794
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||| || | || ||||||||||||||||||| ||||||||| | ||||||||||| |||| | | || ||| |||||| |||||||||    
T  38748689 aaatgttaacgagtgcccccagg-cactctttaagcactttaattagtaagttatttatgaaaagttgtgtattgagtgcattgaaaattataatagttg 38748787  T
Q  109 aattttt 115  Q
    | |||||    
T  38748788 acttttt 38748794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 47187786 - 47187894
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatag 105  Q
    ||||||||||||||||| ||| || |||||||||||| ||||| |||| |||||||||  ||||||| ||||||| | |||| |||  ||||| ||||||    
T  47187786 ggaaaatgttaacgagtatcc-cgtgacactctttaaacacttaaaatggtaagtttttaatgaaaaattatgtattgaatgcattggaaattataatag 47187884  T
Q  106 ttgaattttt 115  Q
    |||| |||||    
T  47187885 ttgatttttt 47187894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 44829410 - 44829311
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||| |||||||||||   |||||||||||||||| |||||||   |||||||||| || ||||||| |||| | |||||||| ||||||||||||||||    
T  44829410 aaatattaacgagtgtttccgggacactctttaagtactttaatcggtaagtttta-ataaaaagttgtgtattgaatgtattaaaaattgtaatagttg 44829312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 34232678 - 34232725
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagt 56  Q
    ||||||||||||||| |||||| ||||||||||||||| |||||||||    
T  34232678 aaatgttaacgagtgccctcggaacactctttaagcaccttaaatagt 34232725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 42791128 - 42791215
Alignment:
Q  28 cgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||||||| |||||| | |||||||||||| |||||||| ||||| | |||| | |||| ||||||||| || |||||||| |||||    
T  42791128 cgggacactttttaagtattttaaatagtaaattttatataaaaagctgtgtattgaatgcatttaaaatagtgatagttgacttttt 42791215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 3982403 - 3982298
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    |||||||||||||||||  |||  |||||||||| ||||||||||||||| |||| ||| ||||||| | || | |||| |||  ||||| |||||||||    
T  3982403 aaatgttaacgagtgtctccggtgcactctttaaacactttaaatagtaaatttt-tattaaaagttgtctattcaatgcattataaattataatagttg 3982305  T
Q  109 aattttt 115  Q
    | |||||    
T  3982304 acttttt 3982298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 32562350 - 32562426
Alignment:
Q  38 tttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||| |||||||||||||||||||| ||| |||| || |||| | | || ||| |||||||||||||||||||||||    
T  32562350 tttaaacactttaaatagtaagtttt-tataaaaaattgtgtattcactgcattgaaaattgtaatagttgaattttt 32562426  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 4772030 - 4771991
Alignment:
Q  140 atgcttaaatagtaccccggaggcactcgttaacaaaacc 179  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  4772030 atgcttaaagagtgccccggaggcactcgttaacaaaacc 4771991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 7549817 - 7549848
Alignment:
Q  12 tgttaacgagtgtcctcgggacactctttaag 43  Q
    ||||||||||||||||||||||||||||||||    
T  7549817 tgttaacgagtgtcctcgggacactctttaag 7549848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 14758697 - 14758635
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaa 72  Q
    |||||||||||||||  ||  |||||||||||||| |||||||||||||| |||| ||||||||    
T  14758697 aaatgttaacgagtgctctaaggacactctttaaggactttaaatagtaaatttt-tatgaaaa 14758635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 31889306 - 31889196
Alignment:
Q  5 tggaaaatgttaacgagtgtc-ctcgggacactctttaagcactttaaatagtaagttttatatg-aaaagttatgtaataaatgtatttaaaattgtaa 102  Q
    ||||||||||||||||||||  || | | ||||||||||||| ||||||| |||||||||  ||| ||||||| |||| |||||| |||  |||| ||||    
T  31889306 tggaaaatgttaacgagtgtttctagtg-cactctttaagcattttaaatggtaagtttttaatgaaaaagttgtgtattaaatgcattagaaatcgtaa 31889208  T
Q  103 tagttgaatttt 114  Q
    ||||||| ||||    
T  31889207 tagttgactttt 31889196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 36321593 - 36321644
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagt 60  Q
    ||||||||||||||||||| ||| ||||||||||| ||| ||||||| ||||    
T  36321593 aaatgttaacgagtgtccttggggcactctttaaggactataaatagcaagt 36321644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 7212906 - 7212841
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagtt 75  Q
    ||||||||| |||||| || | |||||||||||| |||||||||| |||||||||| || |||||||    
T  7212906 aaatgttaatgagtgttct-gagacactctttaaacactttaaattgtaagttttaaataaaaagtt 7212841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 44329735 - 44329629
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttg 108  Q
    ||||||||||||||||   |  |||| ||||||| |||||||||||| |||||||   | |||| ||||||| | |||| ||| |||||| |||||||||    
T  44329735 aaatgttaacgagtgtttccacgacattctttaaacactttaaatagaaagtttttagtaaaaaattatgtattgaatgcattgaaaattataatagttg 44329636  T
Q  109 aattttt 115  Q
    | |||||    
T  44329635 acttttt 44329629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 44329581 - 44329497
Alignment:
Q  31 gacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    ||||||||||||||||||||||||  || ||||  || ||||||||| || |||||| | | |||||| ||||| |||| |||||    
T  44329581 gacactctttaagcactttaaatataaaatttttaataaaaagttatatattaaatgcactgaaaattataataattgacttttt 44329497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 7421812 - 7421705
Alignment:
Q  8 aaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagt-aagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagt 106  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||| ||||||||| | ||||||| |||| |||||| ||| |||||||||||| |    
T  7421812 aaaatgttaacgagtgttcctgtgacactctttaagcactttaaatagtaaagttttat-taaaaagttgtgtattaaatgcattgaaaattgtaatatt 7421714  T
Q  107 tgaattttt 115  Q
    ||| |||||    
T  7421713 tgacttttt 7421705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 175
Target Start/End: Complemental strand, 3766383 - 3766253
Alignment:
Q  42 agcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaatttttnnnnnnntaattttaaaatttgagat 141  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||||||||  ||||||||||| |||| |||||       ||||||  ||||||| |||    
T  3766383 agcactttaaatgataagttttatatgaaaagttatgtaatgaatgtattataaattgtaataattgactttttaaaagaataatttccaaatttgggat 3766284  T
Q  142 gcttaaatagtaccccggaggcactcgttaacaa 175  Q
    ||||||| ||| ||   | |||||||||||||||    
T  3766283 gcttaaagagtgcc---ggggcactcgttaacaa 3766253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 17215646 - 17215756
Alignment:
Q  5 tggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    ||||||||||||||||||| | ||||  ||||||||||||||||||||| |||||||||  || |||| || | || | |||| ||| ||||||||||||    
T  17215646 tggaaaatgttaacgagtgccttcggatcactctttaagcactttaaatggtaagtttttaataaaaaattgtttattgaatgcattgaaaattgtaata 17215745  T
Q  105 gttgaattttt 115  Q
    ||||| |||||    
T  17215746 gttgacttttt 17215756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 23399249 - 23399151
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||||||||||||||||  ||  |||||||||||| |||||||||| |||||||||||| |||||||||| ||  |||  ||| |||||| ||||||||    
T  23399249 aaatgttaacgagtgtctccgaaacactctttaagtactttaaatattaagttttatattaaaagttatgcaacgaatacattgaaaattataatagtt 23399151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 30801883 - 30801785
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaata 104  Q
    |||||||||||||||||  || ||||||| |||||||||||||||||||| |||||||  || ||||||| |||| | |||| ||| |||||| |||||    
T  30801883 ggaaaatgttaacgagtacccccgggacattctttaagcactttaaatagcaagtttttaattaaaagttgtgtattgaatgcattgaaaattataata 30801785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 32823816 - 32823711
Alignment:
Q  9 aaatgttaacgagtgtcctcggga-cactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||||||  |||||||  |||||||||| |||| | |||| ||| |||||||||||| ||    
T  32823816 aaatgttaacgagtg-cctccggagcactctttaagcactttaaataacaagtttttaatgaaaagttgtgtattgaatgcattgaaaattgtaataatt 32823718  T
Q  108 gaatttt 114  Q
    || ||||    
T  32823717 gactttt 32823711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 31855175 - 31855087
Alignment:
Q  27 tcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||| || | || | |||| |||  |||||||||||||||| |||||    
T  31855175 tcgggatactctttaagcactttaaatagtaagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagttgacttttt 31855087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 19293420 - 19293486
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagtt 75  Q
    ||||||||| |||||||||||||   ||||||||||||||||| ||||| ||||| |||||||||||    
T  19293420 aaatgttaatgagtgtcctcggggatctctttaagcactttaattagtaggttttttatgaaaagtt 19293486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 2865016 - 2864917
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttat-atgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    |||||||||| |||| || || |||||||||||| || ||||||| ||||||||| | ||||||| || |||| | |||| |||  ||||||||||||||    
T  2865016 aaatgttaactagtgcccccgagacactctttaaacattttaaatggtaagttttttgatgaaaaattgtgtatttaatgcattgtaaattgtaatagtt 2864917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 4806471 - 4806563
Alignment:
Q  9 aaatgttaacgagtgtcct-cgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaa 102  Q
    |||||||||||||| |||| |||||||||||||||| ||  | ||||||||||||| ||||||||  | |||||| |||||||| ||| ||||||    
T  4806471 aaatgttaacgagt-tcctccgggacactctttaagaaccattaatagtaagtttt-tatgaaaatatgtgtaatcaatgtattgaaatttgtaa 4806563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 13063849 - 13063930
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatt 91  Q
    ||||||| ||||||||| ||| ||||||||||||| ||| |||||||||| | || ||||||||  | |||||| ||||||||    
T  13063849 aaatgttcacgagtgtcttcgagacactctttaaggactataaatagtaactatt-tatgaaaaagtgtgtaatcaatgtatt 13063930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 7465622 - 7465581
Alignment:
Q  2 tgttggaaaatgttaacgagtgtcctcgggacactctttaag 43  Q
    |||||| |||||||||||||||||  ||||||||||||||||    
T  7465622 tgttgggaaatgttaacgagtgtctccgggacactctttaag 7465581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 3605148 - 3605116
Alignment:
Q  12 tgttaacgagtgtcctcgggacactctttaagc 44  Q
    |||||||||||||| ||||||||||||||||||    
T  3605148 tgttaacgagtgtcatcgggacactctttaagc 3605116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 20216 - 20313
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagtt 107  Q
    ||||||||||||||| | ||  |||||||||||||||||||||||  |||||||| ||||||||||| |||| | |||| |||| ||||||||||||||    
T  20216 aaatgttaacgagtgccttcatgacactctttaagcactttaaatgataagtttt-tatgaaaagttgtgtatttaatgcatttgaaattgtaatagtt 20313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 25193 - 25111
Alignment:
Q  34 actctttaagcactttaaatagtaag-ttttatatgaaaagttatgtaataaatgtatttaaaattgtaatagttgaattttt 115  Q
    |||||||||||| ||||||||||||| |||| ||| |||| ||  ||||| |||| ||| ||||||||||||||||| |||||    
T  25193 actctttaagcattttaaatagtaagtttttttataaaaaattgagtaatcaatgcattgaaaattgtaatagttgatttttt 25111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 881 - 938
Alignment:
Q  6 ggaaaatgttaacgagtgtcctcgggacactctttaagcactttaaatagtaagtttt 63  Q
    ||||||||||||||||||||  |||| |||||||||| ||||  |||| |||||||||    
T  881 ggaaaatgttaacgagtgtctccggggcactctttaaacactaaaaatggtaagtttt 938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 4926 - 4962
Alignment:
Q  9 aaatgttaacgagtgtcctcgggacactctttaagca 45  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  4926 aaatgttaacgagtgtcctcggggcacgctttaagca 4962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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