View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10486_low_4 (Length: 493)
Name: NF10486_low_4
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10486_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Complemental strand, 8125024 - 8124555
Alignment:
| Q |
8 |
agcagaacctgtgagttgtgctgagtactttttcagaacaaatgcttgcatcacaatccaaccagaccaacacaaacaatgaccaaagagaaggatgcca |
107 |
Q |
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| T |
8125024 |
agcagaaactgtgagttgtgctgagtactttttcagaacaaatgcttgcatcacaatccaaccagaccaacacaaacaatgaccaaagagaaggatgcca |
8124925 |
T |
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| Q |
108 |
cccaagttcaagtttttcccattggcatcctcaaatgcagacaagaaaatttgtccttgatgtagtgctaaatgtggagcataaatggtaggtcccttgt |
207 |
Q |
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| T |
8124924 |
cccaagttcaagtttttcccattggcatcctcaaatgcagacaagaaaatttgtccttgatgtagtgctaaatgtggagcataaatggtaggtcccttgt |
8124825 |
T |
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| Q |
208 |
aaagggtaatgattgaagctcctccaacagaagcaagtactccaagaaccttggccataccatttatcctatttaagtgcaagctctcatatctgcactt |
307 |
Q |
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| T |
8124824 |
aaagggtaatgattgaagctcctccaacagaagcaagtactccaagaaccttggccataccatttatcctatttaagtgcaagctctcatatctgcactt |
8124725 |
T |
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| Q |
308 |
tacatacataattgaacaagtttatgaatatatcatcaaaaaaggtctgaactttaagctctagagttaaagtgttatagcttgccttaatatcacagcc |
407 |
Q |
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| T |
8124724 |
tacatacataattgaacaagtttatgaatatttcatcaaaaaaggtctgaactttaagctctagagttaaagtgttatagcttgccttaatatcacagcc |
8124625 |
T |
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| Q |
408 |
atgagaaaggtaagggctggaacagaattttgcatagcagaagcaaatgttggtgatgtgttgtccaaac |
477 |
Q |
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| T |
8124624 |
atgagaaaggtaagggctggaacagaattttgcatagcagaagcaaatgttggtgatgtgttgtccaaac |
8124555 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 475
Target Start/End: Original strand, 52730445 - 52730515
Alignment:
| Q |
405 |
gccatgagaaaggtaagggctggaacagaattttgcatagcagaagcaaatgttggtgatgtgttgtccaa |
475 |
Q |
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| T |
52730445 |
gccatgacaaatgtaatggctggtacagaattctgtatagctgatgcaaaggttggagatgtgttgtccaa |
52730515 |
T |
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