View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10486_low_5 (Length: 453)
Name: NF10486_low_5
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10486_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 14576694 - 14577116
Alignment:
| Q |
18 |
gttgaatcatcaaggaaccttgttgcaacaattgtgtcgtattttgaagatnnnnnnngagactatgaaaagctagaaaccccaatctcttctgaagatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||| |||||| |
|
|
| T |
14576694 |
gttgaatcatcaaggaaccttgttgcaacaattgtgtcttattttgaagataaaaaaagagactaggaaaatctagaaaccccaatctcttctaaagatg |
14576793 |
T |
|
| Q |
118 |
aaattagtaagagaaattttcgtaagtttaagttgtccgaaaatgatgagcaagttaggtatcatgtaggacaaatatttgaaaatgttgagttagttaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14576794 |
aaattagtaagagaaattttcgtaagtttaagttgtccgaaaatgatgagcaagttaggtatcatgtaggaaaaatatttgaaaatgttgagttagttaa |
14576893 |
T |
|
| Q |
218 |
aacatctatgaaagaatatattttggaatatatgaagaatgttttccttaagaagaatgagaggnnnnnnnttgttgttaagtgcacgattgaatgtcca |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
14576894 |
a-catctatgaaagaatatattttggaatatatgaagaatgttttccttaagaagaatgagaggaaaaaaattgttgttaagtgcacgattgagtgtcca |
14576992 |
T |
|
| Q |
318 |
tattccatatgagatttagtaagtctgcatcacaaagtaatttttaaattgatagttataagcttgctcatacatgtcatagaactgcaaagctcaagca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14576993 |
tattccatatgagatttagtaagtctgcatcacaaagtaatttttaaattgatagttataaggttgctcatacatgtcatagaactgcaaagctcaagca |
14577092 |
T |
|
| Q |
418 |
atgcaaaacaaagttgatgtccat |
441 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
14577093 |
atgcaaaacaaagttgatggccat |
14577116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University