View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10486_low_6 (Length: 436)

Name: NF10486_low_6
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10486_low_6
NF10486_low_6
[»] scaffold0268 (1 HSPs)
scaffold0268 (1-129)||(18961-19090)
[»] chr8 (19 HSPs)
chr8 (1-129)||(9866132-9866261)
chr8 (163-231)||(13513469-13513537)
chr8 (163-231)||(13603002-13603070)
chr8 (163-231)||(13514864-13514932)
chr8 (163-231)||(13604397-13604465)
chr8 (152-231)||(44103295-44103374)
chr8 (60-129)||(130107-130177)
chr8 (163-231)||(21670113-21670181)
chr8 (163-231)||(39323836-39323904)
chr8 (163-231)||(21961872-21961940)
chr8 (163-226)||(39325838-39325901)
chr8 (169-231)||(44102004-44102066)
chr8 (169-231)||(13363577-13363639)
chr8 (169-223)||(15116864-15116918)
chr8 (163-224)||(13360402-13360463)
chr8 (255-370)||(16362560-16362677)
chr8 (255-360)||(36939902-36940008)
chr8 (84-113)||(9875166-9875195)
chr8 (159-231)||(45384285-45384357)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-116)||(91216-91331)
[»] chr6 (6 HSPs)
chr6 (1-116)||(24016705-24016820)
chr6 (1-129)||(2196947-2197076)
chr6 (32-104)||(629834-629906)
chr6 (159-231)||(19368517-19368589)
chr6 (163-231)||(8447270-8447338)
chr6 (163-231)||(8456074-8456142)
[»] chr5 (13 HSPs)
chr5 (1-116)||(22292716-22292831)
chr5 (164-210)||(12829620-12829666)
chr5 (164-210)||(12861599-12861645)
chr5 (156-231)||(15510262-15510337)
chr5 (164-221)||(2166161-2166218)
chr5 (163-231)||(15509244-15509312)
chr5 (164-231)||(41906397-41906464)
chr5 (164-194)||(14210193-14210223)
chr5 (55-116)||(13579005-13579066)
chr5 (163-231)||(20991648-20991716)
chr5 (163-231)||(22650627-22650695)
chr5 (256-296)||(33431894-33431934)
chr5 (163-231)||(41905224-41905292)
[»] scaffold1603 (1 HSPs)
scaffold1603 (1-102)||(203-304)
[»] chr7 (12 HSPs)
chr7 (1-104)||(13926066-13926169)
chr7 (155-231)||(24495050-24495126)
chr7 (154-231)||(44113469-44113546)
chr7 (159-231)||(26407402-26407474)
chr7 (155-197)||(24494026-24494068)
chr7 (163-231)||(30223975-30224043)
chr7 (163-231)||(36673835-36673903)
chr7 (163-231)||(41126288-41126356)
chr7 (177-231)||(30222709-30222763)
chr7 (177-231)||(44114655-44114709)
chr7 (159-224)||(38408280-38408345)
chr7 (159-231)||(48755547-48755619)
[»] chr4 (12 HSPs)
chr4 (163-231)||(36604840-36604908)
chr4 (154-231)||(2292190-2292267)
chr4 (154-231)||(2293524-2293601)
chr4 (172-231)||(44160410-44160469)
chr4 (156-197)||(38371838-38371879)
chr4 (163-231)||(526718-526786)
chr4 (163-231)||(36604489-36604557)
chr4 (163-230)||(18358373-18358440)
chr4 (176-231)||(29686318-29686373)
chr4 (256-317)||(38417695-38417756)
chr4 (163-231)||(2310781-2310849)
chr4 (322-366)||(52981013-52981057)
[»] chr2 (16 HSPs)
chr2 (155-231)||(26205054-26205130)
chr2 (164-227)||(4512156-4512219)
chr2 (255-358)||(4830546-4830650)
chr2 (163-211)||(37982740-37982788)
chr2 (156-231)||(2305582-2305657)
chr2 (164-231)||(14714542-14714609)
chr2 (164-231)||(41296453-41296520)
chr2 (176-231)||(2306660-2306715)
chr2 (164-231)||(8537062-8537129)
chr2 (159-217)||(3665269-3665327)
chr2 (163-231)||(4513752-4513820)
chr2 (330-366)||(8538530-8538566)
chr2 (6-54)||(15573357-15573405)
chr2 (6-54)||(29075933-29075981)
chr2 (163-195)||(41295154-41295186)
chr2 (159-231)||(41312545-41312617)
[»] chr3 (16 HSPs)
chr3 (163-231)||(7483524-7483592)
chr3 (163-231)||(17350101-17350169)
chr3 (159-231)||(39287515-39287587)
chr3 (169-228)||(31638173-31638232)
chr3 (163-231)||(32973188-32973256)
chr3 (255-353)||(26797460-26797558)
chr3 (275-358)||(19252873-19252957)
chr3 (163-231)||(26797368-26797436)
chr3 (163-231)||(32974222-32974290)
chr3 (163-231)||(48035323-48035391)
chr3 (163-231)||(53047946-53048014)
chr3 (163-231)||(53049036-53049104)
chr3 (166-225)||(7483161-7483220)
chr3 (159-231)||(35633272-35633344)
chr3 (163-231)||(39133066-39133134)
chr3 (163-231)||(52293522-52293590)
[»] chr1 (20 HSPs)
chr1 (154-231)||(51218965-51219042)
chr1 (152-231)||(51217656-51217735)
chr1 (163-231)||(35683104-35683172)
chr1 (176-231)||(25889491-25889546)
chr1 (164-231)||(30551588-30551655)
chr1 (256-350)||(34654219-34654314)
chr1 (164-231)||(37624569-37624636)
chr1 (169-231)||(27689338-27689400)
chr1 (163-231)||(48935109-48935177)
chr1 (176-231)||(2237977-2238032)
chr1 (164-231)||(9415674-9415741)
chr1 (164-231)||(22766819-22766886)
chr1 (164-231)||(23082125-23082192)
chr1 (164-231)||(34654339-34654406)
chr1 (176-231)||(35684202-35684257)
chr1 (255-317)||(14765008-14765070)
chr1 (159-229)||(34531708-34531778)
chr1 (321-366)||(44978530-44978575)
chr1 (163-231)||(2236862-2236930)
chr1 (6-54)||(27052641-27052689)
[»] scaffold0015 (1 HSPs)
scaffold0015 (163-231)||(207797-207865)
[»] scaffold0177 (1 HSPs)
scaffold0177 (176-231)||(1817-1872)
[»] scaffold0002 (1 HSPs)
scaffold0002 (184-231)||(458459-458506)
[»] scaffold1827 (1 HSPs)
scaffold1827 (159-231)||(1058-1130)
[»] scaffold0084 (1 HSPs)
scaffold0084 (179-231)||(11771-11823)


Alignment Details
Target: scaffold0268 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 18961 - 19090
Alignment:
Q  1 taaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcatggtgcacaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  18961 taaatgaatattttacaatataatatgaaacattaaaatattctagcaggtaatttacctccagctgtccttccatgggaaaattgtgcatggtgcacaa 19060  T
Q  101 atctatcatttgtgca-gctaaataccacc 129  Q
    |||||||||||||||| ||||||| |||||    
T  19061 atctatcatttgtgcatgctaaatgccacc 19090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 9866261 - 9866132
Alignment:
Q  1 taaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcatggtgcacaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||||| |||||||||||||||||||||    
T  9866261 taaatgaatattttacaatataatatgaaacattaaaatattctagcaggtcatttacctacagctgtccttccatggaaaaattgtgcatggtgcacaa 9866162  T
Q  101 atctatcatttgtgca-gctaaataccacc 129  Q
    |||||||||||||||| ||||||| |||||    
T  9866161 atctatcatttgtgcatgctaaatgccacc 9866132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 13513469 - 13513537
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  13513469 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgtta 13513537  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 13603002 - 13603070
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  13603002 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcctctccgtta 13603070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 13514932 - 13514864
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  13514932 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgtta 13514864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 13604465 - 13604397
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  13604465 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttctgttacctcttttggtcatctccgtta 13604397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 44103374 - 44103295
Alignment:
Q  152 agaatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||| |||||||||||||    
T  44103374 agaatgatcccctaactaaaaaacgtctcaaattggtctcttatgtcttcttccgtttcctcttttggtcctctccgtta 44103295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 130107 - 130177
Alignment:
Q  60 gccagctgtccttccatgggaaaattgtgcatggtgcacaaatctatcatttgtgca-gctaaataccacc 129  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  130107 gccagctatccttccatgggaaaattgtgcatggtgcacaaatctatcatttgtgcatgctaaatgccacc 130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 21670113 - 21670181
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||    
T  21670113 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcttttggtcttctccgtta 21670181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 39323836 - 39323904
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||||||||||||| || ||||||| |||||| |||||||||||| |||||||||||||    
T  39323836 ctaactaaaaaacgtctcaaattgatctcttatgtcttcttccgttacctcttttggtcctctccgtta 39323904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 21961872 - 21961940
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||| ||||||||||||||||||| |||||||||| |||||| |||| ||||||| |||||||||||||    
T  21961872 ctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgtta 21961940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 39325901 - 39325838
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctc 226  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||||||||||| ||| ||||    
T  39325901 ctaactaaaaaacgttttaaattggtcccttatgttttcttccgttacctcttttagtcatctc 39325838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 44102004 - 44102066
Alignment:
Q  169 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||| ||||    
T  44102004 aaaaaacgtctcaaattggtctcttatgtcttcttccgttacctcttttggtcctctctgtta 44102066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 13363639 - 13363577
Alignment:
Q  169 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||| |||| |||||||||||||||||||   |||||||||||| |||||||||||||    
T  13363639 aaaaaacgtttcaatttggtcccttatgttttctgtggttacctcttttggtcctctccgtta 13363577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 15116918 - 15116864
Alignment:
Q  169 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcct 223  Q
    ||||||||||||||||| ||| |||| ||||||||| |||||||||||| |||||    
T  15116918 aaaaaacgtctcaaattagtctcttacgttttcttccgttacctcttttggtcct 15116864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 13360402 - 13360463
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctc 224  Q
    |||| |||||||||||||||||||||||||||||| |||| | |||| || |||| ||||||    
T  13360402 ctaattaaaaaacgtctcaaattggtcccttatgtattctaccgttatctattttggtcctc 13360463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 370
Target Start/End: Original strand, 16362560 - 16362677
Alignment:
Q  255 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaa--attttttccttgtcttcttctcattccctcttctt 352  Q
    ||||||||||||| | ||  ||||||||| |||| |||| ||||  || ||| ||||||||||  ||||||||||| ||||||||||  |  ||||||||    
T  16362560 gatatgatttcaaccgttcgattgcaggtacattgtatataacagtgagccaacaacacctaattattttttccttttcttcttctctctgtctcttctt 16362659  T
Q  353 cctcttgagcttcaccat 370  Q
    |||| | | |||||||||    
T  16362660 cctcgtaatcttcaccat 16362677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 360
Target Start/End: Complemental strand, 36940008 - 36939902
Alignment:
Q  255 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaaattttttc-cttgtcttcttctcattccctcttcttc 353  Q
    |||||| |||||| ||||  |||||||||||||| |||| || |  |||||| ||||| || | ||||||  ||| |||||| ||||||||||||| |||    
T  36940008 gatatggtttcaaccattcgattgcaggtccattgtatataatagtgaaccaccaacatctgatttttttttcttttcttctcctcattccctcttattc 36939909  T
Q  354 ctcttga 360  Q
    |||||||    
T  36939908 ctcttga 36939902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 9875166 - 9875195
Alignment:
Q  84 ttgtgcatggtgcacaaatctatcatttgt 113  Q
    ||||||||||||||||||||||||||||||    
T  9875166 ttgtgcatggtgcacaaatctatcatttgt 9875195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 45384285 - 45384357
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||| |||||| |||| ||||||| ||| ||||||||||||| | ||||||||| |||| ||| | |||||||    
T  45384285 tcctataactataaaatgtctcaatttgatcccttatgttttttgctgttacctattttggtcatatccgtta 45384357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 91216 - 91331
Alignment:
Q  1 taaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcatggtgcacaa 100  Q
    ||||||||| |||||||||||||||||   |||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  91216 taaatgaatattttacaatataatatgtttcattaaaataatccagcaggtaaattaccgacagctgtccttccatgggaaaattgtgcatggtgcacaa 91315  T
Q  101 atctatcatttgtgca 116  Q
    ||||||||||||||||    
T  91316 atctatcatttgtgca 91331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 24016820 - 24016705
Alignment:
Q  1 taaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcatggtgcacaa 100  Q
    ||||||||| |||||||||||||||||   |||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24016820 taaatgaatattttacaatataatatgtttcattaaaataatccagcaggtaaattaccgtcagctgtccttccatgggaaaattgtgcatggtgcacaa 24016721  T
Q  101 atctatcatttgtgca 116  Q
    ||||||||||||||||    
T  24016720 atctatcatttgtgca 24016705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2196947 - 2197076
Alignment:
Q  1 taaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcatggtgcacaa 100  Q
    ||||||||| |||||||||||||||||   ||||||||||||| || |||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  2196947 taaatgaatattttacaatataatatgtttcattaaaatattccagtaggtaaattaccgccagctgtccttccatacaaaaattgtgcatggtgcacaa 2197046  T
Q  101 atctatcatttgtgca-gctaaataccacc 129  Q
    |||||||||||||||| ||||||| |||||    
T  2197047 atctatcatttgtgcatgctaaatgccacc 2197076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 629906 - 629834
Alignment:
Q  32 attaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcatggtgcacaaatct 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  629906 attaaaatattccagcaggtaaattaccgccagctgtccttccatggaaaaattgtgcatggtgcacaaatct 629834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 19368589 - 19368517
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||| |||  ||||||| |||||| ||||||| ||||   |||||||||||| |||||||||||||    
T  19368589 tcctctaactataaagtgtctcaatttggtctcttatgtcttctgtcgttacctcttttagtcctctccgtta 19368517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 8447270 - 8447338
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| || | | |||||||||||| ||||| |||||||    
T  8447270 ctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 8447338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 8456074 - 8456142
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| || | | |||||||||||| ||||| |||||||    
T  8456074 ctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 8456142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 22292716 - 22292831
Alignment:
Q  1 taaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcatggtgcacaa 100  Q
    ||||||||| |||||||||||||||||   ||||||||||||| ||||||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  22292716 taaatgaatattttacaatataatatgtttcattaaaatattccagcaggtatgaaaccgccagctgtccttccatgggaaaattgtgcatggtgcacaa 22292815  T
Q  101 atctatcatttgtgca 116  Q
    ||||||||||||||||    
T  22292816 atctatcatttgtgca 22292831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 12829620 - 12829666
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttac 210  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12829620 taactaagaaacgtctcaaattggtcccttatgtattcttctgttac 12829666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 12861599 - 12861645
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttac 210  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12861599 taactaagaaacgtctcaaattggtcccttatgtattcttctgttac 12861645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 231
Target Start/End: Complemental strand, 15510337 - 15510262
Alignment:
Q  156 tgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||| ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| |||||||| ||||    
T  15510337 tgatcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctctgtta 15510262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 2166161 - 2166218
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtc 221  Q
    |||||||||||||||||||| ||||||||||||| |||| | |||| || ||||||||    
T  2166161 taactaaaaaacgtctcaaactggtcccttatgtattctgccgttatctattttcgtc 2166218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 15509244 - 15509312
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | ||||||| |||| |||||||||||||    
T  15509244 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctattttggtcctctccgtta 15509312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 41906464 - 41906397
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||||||||||||| ||||||| | |||| | ||||||| |||| |||| || |||||    
T  41906464 taactaaaaaacgtctcaaattggccccttatatattctgccgttacctattttggtccacttcgtta 41906397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 194
Target Start/End: Original strand, 14210193 - 14210223
Alignment:
Q  164 taactaaaaaacgtctcaaattggtccctta 194  Q
    |||||||||||||||||||||||||||||||    
T  14210193 taactaaaaaacgtctcaaattggtccctta 14210223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 13579005 - 13579066
Alignment:
Q  55 ttaccgccagctgtccttccatgggaaaattgtgcatggtgcacaaatctatcatttgtgca 116  Q
    ||||||||| |||||||||||||   || ||||||||| |||||||||||  ||||||||||    
T  13579005 ttaccgccaactgtccttccatgcacaagttgtgcatgatgcacaaatcttgcatttgtgca 13579066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 20991716 - 20991648
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||| ||||||| |||||||||||||| || |   |||||||||||| ||||| |||||||    
T  20991716 ctaactataaaatgtctcaatttggtcccttatgtcttttgtcgttacctcttttggtcctatccgtta 20991648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 22650695 - 22650627
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| || | | |||||||||||| ||||| |||||||    
T  22650695 ctaactataaagtgtctcaatttggtcccttatgtcttttgccgttacctcttttggtcctatccgtta 22650627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 33431894 - 33431934
Alignment:
Q  256 atatgatttcaatcattgaattgcaggtccattttatacaa 296  Q
    |||||||||||||||||  |||||||||||||| |||||||    
T  33431894 atatgatttcaatcattcgattgcaggtccattatatacaa 33431934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 41905224 - 41905292
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||| |||| ||| ||||||||||||| |||| | || |||||||||  ||||||||||||    
T  41905224 ctaactataaaatgtcttaaactggtcccttatgtcttctaccgtcacctcttttgatcctctccgtta 41905292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 203 - 304
Alignment:
Q  1 taaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcatggtgcacaa 100  Q
    ||||||||| |||||||||||||||||   ||||||||||||| || |||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  203 taaatgaatattttacaatataatatgtttcattaaaatattccagaaggtaaattaccaccagctgtcattccatgggaaaattgtgcatggtgcacaa 302  T
Q  101 at 102  Q
    ||    
T  303 at 304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 13926066 - 13926169
Alignment:
Q  1 taaatgaatgttttacaatataatatgaaacattaaaatattctagcaggtaaattaccgccagctgtccttccatgggaaaattgtgcatggtgcacaa 100  Q
    ||||||||| ||||| |||||||||||    |||||||||||| ||||||||||||||||||||||||||||||||   ||| |||||||||||||||||    
T  13926066 taaatgaatattttataatataatatgttttattaaaatattccagcaggtaaattaccgccagctgtccttccatacaaaagttgtgcatggtgcacaa 13926165  T
Q  101 atct 104  Q
    ||||    
T  13926166 atct 13926169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 231
Target Start/End: Complemental strand, 24495126 - 24495050
Alignment:
Q  155 atgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  24495126 atgatcccttaactaaaaaacctctcaaattggtcccttatgtcttcttctgttacctcgtttggtcctctccgtta 24495050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 44113469 - 44113546
Alignment:
Q  154 aatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||  |||||||||||||||||||||||||||||||||| |||| | ||||||| |||| |||| || |||||    
T  44113469 aatgatcccttaactaaaaaacgtctcaaattggtcccttatgtattctgccgttacctattttggtccacttcgtta 44113546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 26407474 - 26407402
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||||||||||||||||| |||||||| | |   ||||||| |||| |||||||| ||||    
T  26407474 tcctctaactaaaaaacgtctcaaattggtctcttatgttatttgtcgttacctattttagtcctctctgtta 26407402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 24494026 - 24494068
Alignment:
Q  155 atgatcctctaactaaaaaacgtctcaaattggtcccttatgt 197  Q
    ||||||| |||||||||||| ||||||||||||||||||||||    
T  24494026 atgatcccctaactaaaaaatgtctcaaattggtcccttatgt 24494068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 30224043 - 30223975
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | ||||| |||||| |||||||||||||    
T  30224043 ctaactataaattgtctcaatttggtcccttatgtcttctgccgttacatcttttggtcctctccgtta 30223975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 36673903 - 36673835
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||| ||||||| |||||||||||||| ||||   |||||||||||| |||||||| ||||    
T  36673903 ctaactataaaatgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctcagtta 36673835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 41126288 - 41126356
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  41126288 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 41126356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 30222709 - 30222763
Alignment:
Q  177 tctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  30222709 tctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 30222763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 44114709 - 44114655
Alignment:
Q  177 tctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| ||||||||||| | |||| |||| ||||||||| |||||||||||||    
T  44114709 tctcaaactggtcccttatatcttctactgtcacctcttttggtcctctccgtta 44114655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 38408345 - 38408280
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctc 224  Q
    ||||||||||| |||  |||||||||||||||||||||| |||| | |||| || |||| ||||||    
T  38408345 tcctctaactataaagtgtctcaaattggtcccttatgtcttctgccgttatctattttggtcctc 38408280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 48755619 - 48755547
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||| |||||| |||| ||||||| ||| ||||||||||||| | | ||||||| |||| ||||| |||||||    
T  48755619 tcctataactataaaatgtctcaatttgatcccttatgttttttgccgttacctattttggtcctatccgtta 48755547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 36604908 - 36604840
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||    
T  36604908 ctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcctctccgtta 36604840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 2292190 - 2292267
Alignment:
Q  154 aatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||| ||| |||||||||||||| |||||||||||||||||||| |||||| ||||||||| || |||||||| ||||    
T  2292190 aatggtcccctaactaaaaaacgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctctgtta 2292267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 2293601 - 2293524
Alignment:
Q  154 aatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||| ||| ||||||||||||||||| ||||||||||||||||| |||||| || | |||| || |||||||||||||    
T  2293601 aatggtcccctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgtaatctctattggtcctctccgtta 2293524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 44160469 - 44160410
Alignment:
Q  172 aaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||||||||||||||| |||||||||||| | || | |||||||| ||||    
T  44160469 aaacgtctcaaattggtcccttatgtattcttctgttacttattgtggtcctctctgtta 44160410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 38371879 - 38371838
Alignment:
Q  156 tgatcctctaactaaaaaacgtctcaaattggtcccttatgt 197  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  38371879 tgatcccctaactaaaaaacgtctcaaattgatcccttatgt 38371838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 526786 - 526718
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| ||||||||||||||  |||  ||||||||||||| |||||||||||||    
T  526786 ctaactataaagtgtctcaacttggtcccttatgtcatctgatgttacctcttttggtcctctccgtta 526718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 36604489 - 36604557
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||| ||||||||||||||||| || |   ||||||||||||  || |||||||||    
T  36604489 ctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctcttttgatcatctccgtta 36604557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 18358440 - 18358373
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtt 230  Q
    ||||||||||||||||| ||||||||||||||||| || |   ||||||||||||  || ||||||||    
T  18358440 ctaactaaaaaacgtcttaaattggtcccttatgtcttttgtcgttacctcttttgatcatctccgtt 18358373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 29686318 - 29686373
Alignment:
Q  176 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||||||||||| || |   |||||||||||| |||||||||||||    
T  29686318 gtctcaaattggtcccttatgtcttatgtcgttacctcttttggtcctctccgtta 29686373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 38417695 - 38417756
Alignment:
Q  256 atatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaa 317  Q
    |||||||||||| | ||  |||||||||||||| |||||||||| || ||| ||||||||||    
T  38417695 atatgatttcaaccgtttgattgcaggtccattgtatacaacactgacccatcaacacctaa 38417756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 2310849 - 2310781
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||| ||||||| |||||||||||||| || | | ||||||||||||  |||| |||||||    
T  2310849 ctaactataaaatgtctcaatttggtcccttatgtcttttgccgttacctcttttgatcctatccgtta 2310781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 52981057 - 52981013
Alignment:
Q  322 tttccttgtcttcttctcattccctcttcttcctcttgagcttca 366  Q
    ||||||| |||||||||| |||||| ||||||||||||| |||||    
T  52981057 tttccttctcttcttctccttccctattcttcctcttgatcttca 52981013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 26205054 - 26205130
Alignment:
Q  155 atgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||||| |||||||| ||| |||||||||||||    
T  26205054 atgatcccttaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacctcgtttggtcctctccgtta 26205130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 4512156 - 4512219
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctcc 227  Q
    |||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||    
T  4512156 taactaaaaaacgtctcaaattggtcccttgtgtcttcttccgttacctcttttggtcctctcc 4512219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 358
Target Start/End: Complemental strand, 4830650 - 4830546
Alignment:
Q  255 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaaattttttc-cttgtcttcttctcattccctcttcttc 353  Q
    ||||||||||||| ||||  |||| ||||||||| |||||||||  |||||| |||||||||| ||||||| ||| ||||| ||||  |||||| |||||    
T  4830650 gatatgatttcaaccattcgattgtaggtccattgtatacaacattgaaccaacaacacctaatttttttctcttttcttcctctccctccctcgtcttc 4830551  T
Q  354 ctctt 358  Q
    |||||    
T  4830550 ctctt 4830546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 37982740 - 37982788
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacc 211  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  37982740 ctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttacc 37982788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 2305582 - 2305657
Alignment:
Q  156 tgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||| ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| |||||||||||||    
T  2305582 tgatcccctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgtta 2305657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 14714542 - 14714609
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||| |||||||| ||||||||||  ||||||| |||||| |||||| ||||| |||||||||||||    
T  14714542 taacttaaaaacgtttcaaattggttgcttatgtcttcttccgttaccacttttggtcctctccgtta 14714609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 41296520 - 41296453
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||| |||| ||||||||||||||||| |   |||| ||||||| |||||||||||||    
T  41296520 taactaaaaaacgtttcaatttggtcccttatgttttttgtcgttatctcttttggtcctctccgtta 41296453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 2306715 - 2306660
Alignment:
Q  176 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| ||||||| |||||| |||| | |||||||||||| |||||||||||||    
T  2306715 gtctcaatttggtccattatgtcttctgccgttacctcttttggtcctctccgtta 2306660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 8537062 - 8537129
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||| |||||||||||||||||||||| ||||   |||| || |||| ||| |||||||||    
T  8537062 taactaaaaaatgtctcaaattggtcccttatgtattctgtcgttatctattttggtcatctccgtta 8537129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 3665269 - 3665327
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctctttt 217  Q
    ||||||||||| |||| || |||| |||||||||||||| |||| | ||||||||||||    
T  3665269 tcctctaactataaaatgtttcaatttggtcccttatgtcttctgccgttacctctttt 3665327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 4513820 - 4513752
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||| |||||||||  |||||| ||||   ||||||||||||  | ||||||||||    
T  4513820 ctaactaaaaaacgtcttaaattggtcttttatgtcttctgtcgttacctcttttgattctctccgtta 4513752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 8538566 - 8538530
Alignment:
Q  330 tcttcttctcattccctcttcttcctcttgagcttca 366  Q
    |||||||||| |||||||||||||||||||| |||||    
T  8538566 tcttcttctccttccctcttcttcctcttgatcttca 8538530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 15573357 - 15573405
Alignment:
Q  6 gaatgttttacaatataatatgaaacattaaaatattctagcaggtaaa 54  Q
    |||| |||||||||||||||||   ||||||||||||| ||||||||||    
T  15573357 gaatattttacaatataatatgtttcattaaaatattccagcaggtaaa 15573405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 29075933 - 29075981
Alignment:
Q  6 gaatgttttacaatataatatgaaacattaaaatattctagcaggtaaa 54  Q
    |||| |||||||||||||||||   ||||||||||||| ||||||||||    
T  29075933 gaatattttacaatataatatgtttcattaaaatattccagcaggtaaa 29075981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 41295154 - 41295186
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttat 195  Q
    |||| ||||||||||||||||||||||||||||    
T  41295154 ctaattaaaaaacgtctcaaattggtcccttat 41295186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 41312545 - 41312617
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||| |||   |||||| |||||| ||||||| || | | |||||||||||| |||||||||||||    
T  41312545 tcctctaactataaagtatctcaatttggtctcttatgtcttatgccgttacctcttttggtcctctccgtta 41312617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 7483592 - 7483524
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||| |||||||||    
T  7483592 ctaactaaaaaacgtcttaaattggtcccttatgtcttcttccgttacctcttttggtcatctccgtta 7483524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 17350169 - 17350101
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| |||| |||||||||||||| |||||||||||||    
T  17350169 ctaactataaagtgtctcaatttggtcccttatgtcttctcctgttacctcttttggtcctctccgtta 17350101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 39287515 - 39287587
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||| |||  ||||||| |||||||||||||||||||   |||||||||||| |||||||||||||    
T  39287515 tcctctaactataaagtgtctcaatttggtcccttatgttttctgtcgttacctcttttggtcctctccgtta 39287587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 31638173 - 31638232
Alignment:
Q  169 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccg 228  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||||  |||||||||    
T  31638173 aaaaaacgtctcaaattggttccttatgtcttcttatgttacctcttttgatcctctccg 31638232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 32973188 - 32973256
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| |||||||||||||    
T  32973188 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctctttttgtcctctccgtta 32973256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 26797460 - 26797558
Alignment:
Q  255 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaaattttttccttgtcttcttctcattccctcttcttc 353  Q
    ||||| ||||||| ||||  |||||||||||||| |||||||||  | |||| |||||||||| ||||||     |||||||||| |||||||||||||    
T  26797460 gatataatttcaaccatttgattgcaggtccattgtatacaacaatggaccatcaacacctaatttttttttccttcttcttctccttccctcttcttc 26797558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 19252957 - 19252873
Alignment:
Q  275 attgcaggtccattttatacaacaccgaaccagcaacacctaaatttttt-ccttgtcttcttctcattccctcttcttcctctt 358  Q
    |||||| ||||||| |||||  ||  |||||| |||||||||| |||||| || | |||||||||| ||||||||||||||||||    
T  19252957 attgcaagtccattatataccgcattgaaccaccaacacctaattttttttccctttcttcttctccttccctcttcttcctctt 19252873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 26797368 - 26797436
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||||||||||||||| |||||||| || | | ||||||| | || | |||||||||||    
T  26797368 ctaactaaaaaacgtctcaaattggttccttatgtattatgccgttacctatcttggccctctccgtta 26797436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 32974290 - 32974222
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| ||| |||||||||    
T  32974290 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgtta 32974222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 48035391 - 48035323
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| || | | |||||||||||| |||||||||||||    
T  48035391 ctaactataaagtgtctcaatttggtcccttatgtcttatgccgttacctcttttggtcctctccgtta 48035323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 53047946 - 53048014
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  53047946 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 53048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 53049104 - 53049036
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  53049104 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 53049036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 7483161 - 7483220
Alignment:
Q  166 actaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctct 225  Q
    |||||||||||||||||||||||| ||||||| || |   |||||||||||| |||||||    
T  7483161 actaaaaaacgtctcaaattggtctcttatgtcttttgtcgttacctcttttggtcctct 7483220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 35633272 - 35633344
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||| |||||| |||| ||||||| ||| ||||||||||||| | | ||||||| |||| ||||| |||||||    
T  35633272 tcctataactataaaatgtctcaatttgatcccttatgttttttgccgttacctatttttgtcctatccgtta 35633344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 39133066 - 39133134
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| ||||   |||||||||||| |||||||| ||||    
T  39133066 ctaactataaagtgtctcaatttggtcccttatgtcttctctcgttacctcttttggtcctctctgtta 39133134  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 52293590 - 52293522
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| ||||||| |||||| ||||   |||||||||||| |||||||||||||    
T  52293590 ctaactataaagtgtctcaatttggtcctttatgtcttctatcgttacctcttttggtcctctccgtta 52293522  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 51219042 - 51218965
Alignment:
Q  154 aatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||| |||  || |||||||||||||    
T  51219042 aatggtcccctaactaaaaaacgtctcaaattggtcccttatgtcttcttccgttaactcaattggtcctctccgtta 51218965  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 51217656 - 51217735
Alignment:
Q  152 agaatgatcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||| ||| |||| ||||||| | |||||||||||||||||||| |||||| ||||||||| || |||||||||||||    
T  51217656 agaatggtcccctaattaaaaaatgcctcaaattggtcccttatgtcttcttccgttacctctcttggtcctctccgtta 51217735  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 35683104 - 35683172
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| |||||||||||||    
T  35683104 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcctctccgtta 35683172  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 25889546 - 25889491
Alignment:
Q  176 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||||| ||||||| |||||| |||||||||||| |||||||||||||    
T  25889546 gtctcaatttggtcacttatgtcttcttccgttacctcttttggtcctctccgtta 25889491  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 30551655 - 30551588
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||| | |||| |||||||||||||||||||   |||||||||||| ||| |||||||||    
T  30551655 taactaaaaaacatttcaatttggtcccttatgttttctatcgttacctcttttggtcatctccgtta 30551588  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 350
Target Start/End: Complemental strand, 34654314 - 34654219
Alignment:
Q  256 atatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacaccta-aattttttccttgtcttcttctcattccctcttc 350  Q
    |||||||||||| ||||  |||||||||||||| |||||||||  |||||| |||||| ||   |||||||||| ||||||||||  |||||||||    
T  34654314 atatgatttcaaccattcgattgcaggtccattgtatacaacaatgaaccaacaacacatagttttttttccttatcttcttctccctccctcttc 34654219  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 37624636 - 37624569
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||| |||| ||||||| |||||||||||   ||||| |||||| |||||||||||||    
T  37624636 taactaaaaaacgtttcaatttggtccgttatgttttctgtcgttacatcttttggtcctctccgtta 37624569  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 27689338 - 27689400
Alignment:
Q  169 aaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||| |||| |||||| ||||||||||||   |||||||||||| |||||||||||||    
T  27689338 aaaaaacgtttcaatttggtctcttatgttttctgtcgttacctcttttggtcctctccgtta 27689400  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 48935177 - 48935109
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| |||| | |||||||||||| ||| |||||||||    
T  48935177 ctaactataaagtgtctcaatttggtcccttatgtcttctgccgttacctcttttggtcatctccgtta 48935109  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 2238032 - 2237977
Alignment:
Q  176 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  2238032 gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 2237977  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 9415674 - 9415741
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||||| ||||||||||||||||| || | | ||||||| |||| |||| || |||||    
T  9415674 taactaaaaaacgtcttaaattggtcccttatgtattatgccgttacctattttggtccacttcgtta 9415741  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 22766886 - 22766819
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||| |||| ||| |||||||||||||||   ||| |||||||| ||||| |||||||    
T  22766886 taactaaaaaacgtttcaatttgatcccttatgttttctgtcgttgcctcttttggtcctttccgtta 22766819  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 23082192 - 23082125
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||| |||| |||||||||||| ||||||   ||| |||||||| ||||| |||||||    
T  23082192 taactaaaaaacgtttcaatttggtcccttatattttctgtcgttgcctcttttggtcctttccgtta 23082125  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 34654406 - 34654339
Alignment:
Q  164 taactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||| ||||||| |||| |||||| ||||||| |||| | ||||||||| || |||||||||||||    
T  34654406 taactataaaacgtttcaatttggtctcttatgtcttctaccgttacctctattggtcctctccgtta 34654339  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 35684257 - 35684202
Alignment:
Q  176 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  35684257 gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 35684202  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 14765070 - 14765008
Alignment:
Q  255 gatatgatttcaatcattgaattgcaggtccattttatacaacaccgaaccagcaacacctaa 317  Q
    ||||||||||||| | ||  |||||||||||||| |||||||||| || ||| ||||||||||    
T  14765070 gatatgatttcaaccttttgattgcaggtccattgtatacaacactgacccatcaacacctaa 14765008  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 34531708 - 34531778
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgt 229  Q
    ||||||||||| |||| ||||||| |||||| ||||||| ||||   |||| ||||||| |||||||||||    
T  34531708 tcctctaactataaaatgtctcaatttggtctcttatgtcttctgtcgttatctcttttggtcctctccgt 34531778  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 44978575 - 44978530
Alignment:
Q  321 ttttccttgtcttcttctcattccctcttcttcctcttgagcttca 366  Q
    |||||||| |||||||||| |||||| ||||||||||||| |||||    
T  44978575 ttttccttttcttcttctccttccctattcttcctcttgatcttca 44978530  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 2236862 - 2236930
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||  ||||||| |||||||||||||| ||||   ||||||||||||  ||||||||||||    
T  2236862 ctaactataaagtgtctcaatttggtcccttatgtcttctgtcgttacctcttttgatcctctccgtta 2236930  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 27052641 - 27052689
Alignment:
Q  6 gaatgttttacaatataatatgaaacattaaaatattctagcaggtaaa 54  Q
    |||| |||||||||||||||||   ||||||||||||| ||||||||||    
T  27052641 gaatattttacaatataatatgtttcattaaaatattccagcaggtaaa 27052689  T

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Target: scaffold0015 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 207865 - 207797
Alignment:
Q  163 ctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||| ||||||||||||||||||| |||||||||| |||||| |||| ||||||| |||||||||||||    
T  207865 ctaattaaaaaacgtctcaaattgatcccttatgtcttcttccgttatctcttttggtcctctccgtta 207797  T

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Target: scaffold0177 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 1817 - 1872
Alignment:
Q  176 gtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||| |||||||||||||| ||||   |||||||||||| |||||||||||||    
T  1817 gtctcaatttggtcccttatgtcttctgtcgttacctcttttggtcctctccgtta 1872  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 458506 - 458459
Alignment:
Q  184 ttggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||||||||||||| |||| |||||| ||||||| |||||||||||||    
T  458506 ttggtcccttatgtcttctgctgttatctcttttggtcctctccgtta 458459  T

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Target: scaffold1827 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1827
Description:

Target: scaffold1827; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 1130 - 1058
Alignment:
Q  159 tcctctaactaaaaaacgtctcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    ||||||||||| |||  ||||||| |||||||||||||| || |  |||||||||||||  |||| |||||||    
T  1130 tcctctaactataaagtgtctcaatttggtcccttatgtcttttattgttacctcttttgctcctatccgtta 1058  T

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Target: scaffold0084 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 11771 - 11823
Alignment:
Q  179 tcaaattggtcccttatgttttcttctgttacctcttttcgtcctctccgtta 231  Q
    |||| |||||||||||||| |||| | ||||||| |||| |||||||||||||    
T  11771 tcaatttggtcccttatgtcttctccagttacctattttggtcctctccgtta 11823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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