View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10486_low_8 (Length: 325)
Name: NF10486_low_8
Description: NF10486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10486_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 40077130 - 40076826
Alignment:
| Q |
1 |
gcccaataagtgtccatttttgggtgcaacaatgcattgttgtagattatgtcgtggttgtgtatacgacaataatcaaccttgtttttaaagaaccgca |
100 |
Q |
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| T |
40077130 |
gcccaataagtgtccattttcgggtccaacaatgcattgttgtagattatgtcgtggttgtgtatacgacaataatcaaccttgtttttaaagaaccgca |
40077031 |
T |
|
| Q |
101 |
gtaaaaggtggtcgccaatcgggttgtcacactttgtaggttgtgaaccggttataacaagtatcttttcgcttgctccgaccacgaatgaaggatggtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40077030 |
gtaaaaggtggtcgccaatcgggttgtcacactttgtaggttgtgaacccgttataacaagtatcttttcgcttgctccgaccacgaatgaaggatggtg |
40076931 |
T |
|
| Q |
201 |
aagtagccattctttacgcttctcgtcccaatttttcactggtttgtccatggtgtaacatgtttgtggatcgtcatagaaggttttgtctgaagggtcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40076930 |
aagtagccattctttacgcttctcgtcccaatttttcactggtttgtccatggtgtaacatgtttgtggatcgtcatagaaggttttgtctgaagggtcg |
40076831 |
T |
|
| Q |
301 |
tgtaa |
305 |
Q |
| |
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||||| |
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| T |
40076830 |
tgtaa |
40076826 |
T |
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