View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10487_high_2 (Length: 283)
Name: NF10487_high_2
Description: NF10487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10487_high_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 10468399 - 10468668
Alignment:
| Q |
14 |
cagagacaaaacatgtacacaaatttaacaagtgaacaaatcatacacacaatcacaatggtccctaaaaagttatcctacttcttcctttttcttcaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
10468399 |
cagagacaaaacatgtacacaaatttaacaagtgaacaaatcatacacacaatcacaatggtccctaaaaagctatcctacttcttcctttttcttgaaa |
10468498 |
T |
|
| Q |
114 |
taaacccattttcaatttctgactaacgtattacaaacccaaaaatataaatttttaactttttgtaaatatccaaattatcattgaaatggtgggtcta |
213 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10468499 |
taaacccattttcaatttctgactaatgtattacaaacccaaaaatataaattttgaactttttgtaaatatccaaattatcattgaaatggtgggtcta |
10468598 |
T |
|
| Q |
214 |
tctactcaatcaaattatggatatacaaaaataattttaaaattgcaaaattataatcaattttgtctta |
283 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
10468599 |
tttactcgatcaaattatggatatacaaaaataattttaaaattgcaaaattataatcaaatttgactta |
10468668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University