View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10487_low_2 (Length: 329)

Name: NF10487_low_2
Description: NF10487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10487_low_2
NF10487_low_2
[»] chr5 (4 HSPs)
chr5 (137-318)||(22808059-22808240)
chr5 (18-137)||(22809381-22809499)
chr5 (134-186)||(22808106-22808158)
chr5 (59-121)||(33231855-33231917)
[»] chr8 (7 HSPs)
chr8 (134-318)||(19646273-19646457)
chr8 (18-137)||(19647574-19647693)
chr8 (218-269)||(19646407-19646458)
chr8 (59-121)||(192784-192846)
chr8 (59-121)||(720388-720450)
chr8 (59-121)||(881495-881557)
chr8 (136-189)||(19646462-19646515)
[»] chr4 (23 HSPs)
chr4 (134-318)||(22696839-22697023)
chr4 (134-288)||(28949082-28949236)
chr4 (134-288)||(22714825-22714979)
chr4 (134-288)||(22990246-22990400)
chr4 (18-137)||(22698114-22698233)
chr4 (18-137)||(22982297-22982416)
chr4 (18-137)||(22995884-22996003)
chr4 (134-293)||(46956548-46956710)
chr4 (218-269)||(46956660-46956711)
chr4 (218-269)||(22714824-22714875)
chr4 (218-269)||(22990350-22990401)
chr4 (218-269)||(28949081-28949132)
chr4 (59-121)||(24036838-24036900)
chr4 (136-189)||(22990405-22990458)
chr4 (136-189)||(46956715-46956768)
chr4 (218-269)||(22696973-22697024)
chr4 (136-189)||(22697028-22697081)
chr4 (136-189)||(22714767-22714820)
chr4 (136-189)||(28949024-28949077)
chr4 (253-293)||(22714978-22715018)
chr4 (253-293)||(22990207-22990247)
chr4 (229-269)||(22990410-22990450)
chr4 (229-269)||(46956720-46956760)
[»] chr1 (5 HSPs)
chr1 (134-318)||(4344186-4344369)
chr1 (18-137)||(4345370-4345489)
chr1 (218-269)||(4344319-4344370)
chr1 (59-121)||(46406886-46406948)
chr1 (136-189)||(4344374-4344427)
[»] chr7 (4 HSPs)
chr7 (134-293)||(20087600-20087759)
chr7 (218-269)||(20087709-20087760)
chr7 (136-189)||(20087764-20087817)
chr7 (229-269)||(20087769-20087809)
[»] chr2 (6 HSPs)
chr2 (134-280)||(23362505-23362651)
chr2 (18-137)||(23361559-23361678)
chr2 (276-318)||(23376313-23376355)
chr2 (218-269)||(23362504-23362555)
chr2 (59-121)||(14036025-14036087)
chr2 (59-121)||(13895398-13895460)
[»] scaffold0009 (4 HSPs)
scaffold0009 (142-288)||(200716-200862)
scaffold0009 (134-184)||(200793-200843)
scaffold0009 (253-293)||(200861-200901)
scaffold0009 (136-189)||(200640-200693)
[»] chr3 (2 HSPs)
chr3 (18-137)||(7011035-7011154)
chr3 (59-121)||(51126007-51126069)


Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 137 - 318
Target Start/End: Complemental strand, 22808240 - 22808059
Alignment:
Q  137 ataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatacttcat 236  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  22808240 ataatagtacttcatagttactagtacttcctagattacttcttaatttaaagataacggaacattacaacattaaagactaaacataacaatacttcat 22808141  T
Q  237 agttactagtacttcatagattacttcttaattcataatacttcctagcttaattcccatcacatcctagtcacacaggttc 318  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  22808140 agttactagtacttcatagattacttcttaatttatagtacttcctagcttaattcccatcacatcctagtcacataggttc 22808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 22809499 - 22809381
Alignment:
Q  18 atatattcgatggacaaactcaagcaagcaacttacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctat 117  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22809499 atatattctatggacaaactcaagcaagcaactaacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatcattctat 22809400  T
Q  118 tacccactccatgtccaaca 137  Q
    |||||||||| |||||||||    
T  22809399 tacccactcc-tgtccaaca 22809381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 22808158 - 22808106
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaattta 186  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  22808158 aacataacaatacttcatagttactagtacttcatagattacttcttaattta 22808106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 33231917 - 33231855
Alignment:
Q  59 atgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctattacc 121  Q
    |||||||  |||||| ||||| || || |||||||| |||||||||||||| |||||||||||    
T  33231917 atgaaaatatctactaacagtctcacccgagtgttgaaacctttcttgaatcattctattacc 33231855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 134 - 318
Target Start/End: Complemental strand, 19646457 - 19646273
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatactt 233  Q
    ||||||||| ||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||    
T  19646457 aacataacaatacttcaaagttaccggtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagattaaacataagagtactt 19646358  T
Q  234 catagttactagtacttcatagattacttcttaattcataatacttcctagcttaattcccatcacatcctagtcacacaggttc 318  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  19646357 catagttactagtacttcgtagattacttcttaattcatagtacttcctagcttaattcccattacatcctagtcacacaggttc 19646273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 19647693 - 19647574
Alignment:
Q  18 atatattcgatggacaaactcaagcaagcaacttacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctat 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19647693 atatattcgatggacaaactcaagcaagcaactaacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatcattctat 19647594  T
Q  118 tacccactccatgtccaaca 137  Q
    ||||||||||||||||||||    
T  19647593 tacccactccatgtccaaca 19647574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 19646458 - 19646407
Alignment:
Q  218 aaacataacaatacttcatagttactagtacttcatagattacttcttaatt 269  Q
    |||||||||||||||||| ||||||  ||||||| |||||||||||||||||    
T  19646458 aaacataacaatacttcaaagttaccggtacttcctagattacttcttaatt 19646407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 192846 - 192784
Alignment:
Q  59 atgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctattacc 121  Q
    ||||||| ||||||| ||||| || || |||||||| |||||||||||||| |||||||||||    
T  192846 atgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattctattacc 192784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 720450 - 720388
Alignment:
Q  59 atgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctattacc 121  Q
    ||||||| ||||||| ||||| || || |||||||| |||||||||||||| |||||||||||    
T  720450 atgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattctattacc 720388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 881557 - 881495
Alignment:
Q  59 atgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctattacc 121  Q
    ||||||| ||||||| ||||| || || |||||||| |||||||||||||| |||||||||||    
T  881557 atgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattctattacc 881495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 19646515 - 19646462
Alignment:
Q  136 cataacagtacttcatagttactagtacttcctagattacttcttaatttaaag 189  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||| ||||| ||||    
T  19646515 cataagagtacttcatagttactaccacttcttagattacttcctaattgaaag 19646462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 134 - 318
Target Start/End: Complemental strand, 22697023 - 22696839
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatactt 233  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | |||||    
T  22697023 aacataacagtacttcaaagttaccggtacttcctagattacttcttaatttaaagacaacagagcattacaacattaaagactaaacaaaatagtactt 22696924  T
Q  234 catagttactagtacttcatagattacttcttaattcataatacttcctagcttaattcccatcacatcctagtcacacaggttc 318  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||    
T  22696923 catagttactagtacttcgtagattacttcttaattcatagtacttcctaggttaattcccattacatcctagtcacacaggttc 22696839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 28949082 - 28949236
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatactt 233  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  28949082 aacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtactt 28949181  T
Q  234 catagttactagtacttcatagattacttcttaattcataatacttcctagctta 288  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||    
T  28949182 catagttactattacttcctagattacttcttaattcatagtacatcctagctta 28949236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 134 - 288
Target Start/End: Original strand, 22714825 - 22714979
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatactt 233  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  22714825 aacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtactt 22714924  T
Q  234 catagttactagtacttcatagattacttcttaattcataatacttcctagctta 288  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||| ||||| ||||    
T  22714925 catagttactaatacttcctagattacttcttaattcatagtacatcctatctta 22714979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 22990400 - 22990246
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatactt 233  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  22990400 aacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtactt 22990301  T
Q  234 catagttactagtacttcatagattacttcttaattcataatacttcctagctta 288  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||| ||||| ||||    
T  22990300 catagttactaatacttcctagattacttcttaattcatagtacatcctatctta 22990246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 22698233 - 22698114
Alignment:
Q  18 atatattcgatggacaaactcaagcaagcaacttacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctat 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  22698233 atatattcgatggacaaactcaagcaagcaactaacacatcatgaaaacgtctactcacagtttctcctaagtgttggaacctttcttgaatcattctat 22698134  T
Q  118 tacccactccatgtccaaca 137  Q
    ||||||||||||||||||||    
T  22698133 tacccactccatgtccaaca 22698114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 22982297 - 22982416
Alignment:
Q  18 atatattcgatggacaaactcaagcaagcaacttacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctat 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  22982297 atatattcgatggacaaactcaagcaagcaactaacacatcatgaaaacgtctactcacagtttctcctaagtgttggaacctttcttgaatcattctat 22982396  T
Q  118 tacccactccatgtccaaca 137  Q
    ||||||||||||||||||||    
T  22982397 tacccactccatgtccaaca 22982416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 22995884 - 22996003
Alignment:
Q  18 atatattcgatggacaaactcaagcaagcaacttacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctat 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  22995884 atatattcgatggacaaactcaagcaagcaactaacacatcatgaaaacgtctactcacagtttctcctaagtgttggaacctttcttgaatcattctat 22995983  T
Q  118 tacccactccatgtccaaca 137  Q
    ||||||||||||||||||||    
T  22995984 tacccactccatgtccaaca 22996003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 134 - 293
Target Start/End: Complemental strand, 46956710 - 46956548
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagacta---aacataacaata 230  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||   || |||||| |     
T  46956710 aacataacagtacttgatagttactagtacttcctagattacttcttaatttaaagataatggaacattacaacattaaagactaaataatataacagtg 46956611  T
Q  231 cttcatagttactagtacttcatagattacttcttaattcataatacttcctagcttaattcc 293  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||| ||||    
T  46956610 cttcatagttactagtacttcctagattacttcttaattcatagtactttctagcttacttcc 46956548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 46956711 - 46956660
Alignment:
Q  218 aaacataacaatacttcatagttactagtacttcatagattacttcttaatt 269  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  46956711 aaacataacagtacttgatagttactagtacttcctagattacttcttaatt 46956660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 22714824 - 22714875
Alignment:
Q  218 aaacataacaatacttcatagttactagtacttcatagattacttcttaatt 269  Q
    |||||||||| ||||||||||||||  ||||||| |||||||||||||||||    
T  22714824 aaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 22714875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 22990401 - 22990350
Alignment:
Q  218 aaacataacaatacttcatagttactagtacttcatagattacttcttaatt 269  Q
    |||||||||| ||||||||||||||  ||||||| |||||||||||||||||    
T  22990401 aaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 22990350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 28949081 - 28949132
Alignment:
Q  218 aaacataacaatacttcatagttactagtacttcatagattacttcttaatt 269  Q
    |||||||||| ||||||||||||||  ||||||| |||||||||||||||||    
T  28949081 aaacataacagtacttcatagttacaggtacttcctagattacttcttaatt 28949132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 24036838 - 24036900
Alignment:
Q  59 atgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctattacc 121  Q
    ||||||| ||||||| ||||| || || |||||||| |||||||||||||| |||||||||||    
T  24036838 atgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattctattacc 24036900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 22990458 - 22990405
Alignment:
Q  136 cataacagtacttcatagttactagtacttcctagattacttcttaatttaaag 189  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||| ||||| ||||    
T  22990458 cataagagtacttcatagttactagcacttcttagattacttcctaattgaaag 22990405  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 46956768 - 46956715
Alignment:
Q  136 cataacagtacttcatagttactagtacttcctagattacttcttaatttaaag 189  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||| ||||| ||||    
T  46956768 cataatagtacttcatagttactagcacttcttagattacttcctaattaaaag 46956715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 22697024 - 22696973
Alignment:
Q  218 aaacataacaatacttcatagttactagtacttcatagattacttcttaatt 269  Q
    |||||||||| ||||||| ||||||  ||||||| |||||||||||||||||    
T  22697024 aaacataacagtacttcaaagttaccggtacttcctagattacttcttaatt 22696973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 22697081 - 22697028
Alignment:
Q  136 cataacagtacttcatagttactagtacttcctagattacttcttaatttaaag 189  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||| ||||| ||||    
T  22697081 cataagagtacttcatagttactaccacttcttagattacttcctaattgaaag 22697028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 22714767 - 22714820
Alignment:
Q  136 cataacagtacttcatagttactagtacttcctagattacttcttaatttaaag 189  Q
    ||||| ||||||||||||||||||| ||||  ||||||||||| ||||| ||||    
T  22714767 cataagagtacttcatagttactagcactttttagattacttcctaattgaaag 22714820  T

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Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 28949024 - 28949077
Alignment:
Q  136 cataacagtacttcatagttactagtacttcctagattacttcttaatttaaag 189  Q
    ||||| ||||||||||||||||||| ||||  ||||||||||| ||||| ||||    
T  28949024 cataagagtacttcatagttactagcactttttagattacttcctaattgaaag 28949077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 22714978 - 22715018
Alignment:
Q  253 tagattacttcttaattcataatacttcctagcttaattcc 293  Q
    ||||||||||||||||||||| ||||||||| |||| ||||    
T  22714978 tagattacttcttaattcatagtacttcctaacttacttcc 22715018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 22990247 - 22990207
Alignment:
Q  253 tagattacttcttaattcataatacttcctagcttaattcc 293  Q
    ||||||||||||||||||||| ||||||||| |||| ||||    
T  22990247 tagattacttcttaattcatagtacttcctaacttacttcc 22990207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 22990450 - 22990410
Alignment:
Q  229 tacttcatagttactagtacttcatagattacttcttaatt 269  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  22990450 tacttcatagttactagcacttcttagattacttcctaatt 22990410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 46956760 - 46956720
Alignment:
Q  229 tacttcatagttactagtacttcatagattacttcttaatt 269  Q
    ||||||||||||||||| ||||| ||||||||||| |||||    
T  46956760 tacttcatagttactagcacttcttagattacttcctaatt 46956720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 134 - 318
Target Start/End: Complemental strand, 4344369 - 4344186
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatactt 233  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| |||||    
T  4344369 aacataacaatacttcaaagttactggtacttcctagattacttcttaatttaaagacaacgaaacatta-aacattaaagactaaacataacagtactt 4344271  T
Q  234 catagttactagtacttcatagattacttcttaattcataatacttcctagcttaattcccatcacatcctagtcacacaggttc 318  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  4344270 catagttactagtacttcgtagattacttcttaattcatagtacttcctagcttaattcccattacatcctagtcacacaggttc 4344186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 4345489 - 4345370
Alignment:
Q  18 atatattcgatggacaaactcaagcaagcaacttacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctat 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4345489 atatattcgatggacaaactcaagcaagcaactaacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatcattctat 4345390  T
Q  118 tacccactccatgtccaaca 137  Q
    ||||||||||||||||||||    
T  4345389 tacccactccatgtccaaca 4345370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 4344370 - 4344319
Alignment:
Q  218 aaacataacaatacttcatagttactagtacttcatagattacttcttaatt 269  Q
    |||||||||||||||||| ||||||| ||||||| |||||||||||||||||    
T  4344370 aaacataacaatacttcaaagttactggtacttcctagattacttcttaatt 4344319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 46406948 - 46406886
Alignment:
Q  59 atgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctattacc 121  Q
    |||||||| |||||| ||||| || |  |||||||| |||||||||||||| |||||||||||    
T  46406948 atgaaaacatctactaacagtctcactcgagtgttgaaacctttcttgaatcattctattacc 46406886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 4344427 - 4344374
Alignment:
Q  136 cataacagtacttcatagttactagtacttcctagattacttcttaatttaaag 189  Q
    ||||| ||||||||||||||||||  ||||| ||||||||||| ||||| ||||    
T  4344427 cataagagtacttcatagttactaccacttcttagattacttcctaattgaaag 4344374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 134 - 293
Target Start/End: Complemental strand, 20087759 - 20087600
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatactt 233  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |||||    
T  20087759 aacataacagtacttcatagttactagtactttctagattacttcttaatttaaagataacggaacattacaacattaaagactaaatataacagtactt 20087660  T
Q  234 catagttactagtacttcatagattacttcttaattcataatacttcctagcttaattcc 293  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  20087659 catagttactagtacttcctagattacttcttaattcataagacttcctagcttacttcc 20087600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 20087760 - 20087709
Alignment:
Q  218 aaacataacaatacttcatagttactagtacttcatagattacttcttaatt 269  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  20087760 aaacataacagtacttcatagttactagtactttctagattacttcttaatt 20087709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 20087817 - 20087764
Alignment:
Q  136 cataacagtacttcatagttactagtacttcctagattacttcttaatttaaag 189  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||    
T  20087817 cataatagtacttcatagttactagtacttcttagattacttcctaattaaaag 20087764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 20087809 - 20087769
Alignment:
Q  229 tacttcatagttactagtacttcatagattacttcttaatt 269  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  20087809 tacttcatagttactagtacttcttagattacttcctaatt 20087769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 134 - 280
Target Start/End: Original strand, 23362505 - 23362651
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatactt 233  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23362505 aacataacagtacttcatagttattagtacttcctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacaatactt 23362604  T
Q  234 catagttactagtacttcatagattacttcttaattcataatacttc 280  Q
     ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  23362605 aatagttactagtacttcgtagattacttcttaattcatagtacttc 23362651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 23361559 - 23361678
Alignment:
Q  18 atatattcgatggacaaactcaagcaagcaacttacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctat 117  Q
    |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23361559 atatattcgatggacaaactcaagaaagaaactaacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatcattctat 23361658  T
Q  118 tacccactccatgtccaaca 137  Q
    ||||||||||||||||||||    
T  23361659 tacccactccatgtccaaca 23361678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 318
Target Start/End: Original strand, 23376313 - 23376355
Alignment:
Q  276 acttcctagcttaattcccatcacatcctagtcacacaggttc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  23376313 acttcctagcttaattcccatcacatcctagtcacacaggttc 23376355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 269
Target Start/End: Original strand, 23362504 - 23362555
Alignment:
Q  218 aaacataacaatacttcatagttactagtacttcatagattacttcttaatt 269  Q
    |||||||||| ||||||||||||| ||||||||| |||||||||||||||||    
T  23362504 aaacataacagtacttcatagttattagtacttcctagattacttcttaatt 23362555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 14036087 - 14036025
Alignment:
Q  59 atgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctattacc 121  Q
    ||||||| ||||||| ||||| || || |||||||| |||||||||||||| |||||||||||    
T  14036087 atgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattctattacc 14036025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 13895460 - 13895398
Alignment:
Q  59 atgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctattacc 121  Q
    |||||||  |||||| ||||| || || |||||||| |||||||||||||| |||||||||||    
T  13895460 atgaaaatatctactaacagtctcacccgagtgttgaaacctttcttgaatcattctattacc 13895398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 142 - 288
Target Start/End: Original strand, 200716 - 200862
Alignment:
Q  142 agtacttcatagttactagtacttcctagattacttcttaatttaaagacaacagaacattacaacattaaagactaaacataacaatacttcatagtta 241  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  200716 agtacttcatagttacaggtacttcctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagtta 200815  T
Q  242 ctagtacttcatagattacttcttaattcataatacttcctagctta 288  Q
    ||| |||||| ||||||||||||||||||||| ||| ||||||||||    
T  200816 ctattacttcctagattacttcttaattcatagtacatcctagctta 200862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 200793 - 200843
Alignment:
Q  134 aacataacagtacttcatagttactagtacttcctagattacttcttaatt 184  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  200793 aacataacagtacttcatagttactattacttcctagattacttcttaatt 200843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 200861 - 200901
Alignment:
Q  253 tagattacttcttaattcataatacttcctagcttaattcc 293  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  200861 tagattacttcttaattcatagtacttcctagcttacttcc 200901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 200640 - 200693
Alignment:
Q  136 cataacagtacttcatagttactagtacttcctagattacttcttaatttaaag 189  Q
    ||||| ||||||||||||||||||| ||||| ||||||| ||| ||||| ||||    
T  200640 cataagagtacttcatagttactagcacttcttagattaattcctaattgaaag 200693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 7011154 - 7011035
Alignment:
Q  18 atatattcgatggacaaactcaagcaagcaacttacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctat 117  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  7011154 atatattcgatggacaaactcaagcaagcaactaacacatcatgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaatcattttat 7011055  T
Q  118 tacccactccatgtccaaca 137  Q
    ||||||||||||||||||||    
T  7011054 tacccactccatgtccaaca 7011035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 51126007 - 51126069
Alignment:
Q  59 atgaaaacgtctactcacagtttctcctgagtgttggaacctttcttgaataattctattacc 121  Q
    ||||||| ||||||| ||||| || || |||||||| |||||||||||||| |||||||||||    
T  51126007 atgaaaatgtctacttacagtctcacccgagtgttgaaacctttcttgaatcattctattacc 51126069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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