View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10487_low_6 (Length: 201)

Name: NF10487_low_6
Description: NF10487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10487_low_6
NF10487_low_6
[»] chr5 (2 HSPs)
chr5 (15-128)||(36018785-36018898)
chr5 (15-106)||(36024732-36024823)
[»] chr1 (1 HSPs)
chr1 (128-185)||(50966577-50966634)
[»] chr7 (2 HSPs)
chr7 (129-185)||(48659730-48659786)
chr7 (129-185)||(48658599-48658655)
[»] chr6 (3 HSPs)
chr6 (129-185)||(31081101-31081157)
chr6 (129-185)||(31085260-31085316)
chr6 (128-185)||(31595519-31595576)
[»] chr2 (2 HSPs)
chr2 (128-185)||(9310483-9310540)
chr2 (129-178)||(9306329-9306378)
[»] chr3 (1 HSPs)
chr3 (129-185)||(10134619-10134675)
[»] scaffold0012 (1 HSPs)
scaffold0012 (129-184)||(154503-154558)


Alignment Details
Target: chr5 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 36018785 - 36018898
Alignment:
Q  15 atgaaccagtttacctccagcatcaccgcccacttcaacttctctagccatagtagagattccttttcctgtcctggcagcagcagccgctgcttctctc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36018785 atgaaccagtttacctccagcatcaccgcccacttcaacttctctagccatagtagagattccttttcctgtcctggcagcagcagccgctgcttctctc 36018884  T
Q  115 cctgtcgccagacc 128  Q
    ||||||||||||||    
T  36018885 cctgtcgccagacc 36018898  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 36024732 - 36024823
Alignment:
Q  15 atgaaccagtttacctccagcatcaccgcccacttcaacttctctagccatagtagagattccttttcctgtcctggcagcagcagccgctg 106  Q
    |||||||||||| |||||||| ||||| ||| ||||||| |||| ||| || | || || ||||||||||| ||| | ||||||||| ||||    
T  36024732 atgaaccagtttgcctccagcttcaccacccgcttcaacatctccagcgatcggagggactccttttcctgcccttgtagcagcagcagctg 36024823  T

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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 128 - 185
Target Start/End: Original strand, 50966577 - 50966634
Alignment:
Q  128 ctgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50966577 ctgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 50966634  T

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Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 48659786 - 48659730
Alignment:
Q  129 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48659786 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 48659730  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 48658655 - 48658599
Alignment:
Q  129 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48658655 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagcaaatat 48658599  T

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Target: chr6 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 31081157 - 31081101
Alignment:
Q  129 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31081157 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 31081101  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 31085316 - 31085260
Alignment:
Q  129 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31085316 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 31085260  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 31595576 - 31595519
Alignment:
Q  128 ctgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31595576 ctgttggttatttgatgaaatatagtggttataacaagaatgaacaaagataaaatat 31595519  T

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Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 9310540 - 9310483
Alignment:
Q  128 ctgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 185  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9310540 ctgtcggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 9310483  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 129 - 178
Target Start/End: Complemental strand, 9306378 - 9306329
Alignment:
Q  129 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagag 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9306378 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagag 9306329  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 10134675 - 10134619
Alignment:
Q  129 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaatat 185  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10134675 tgttggttatttgatgaaatacagtggttataacaagaatgaacaaagagaaaatat 10134619  T

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Target: scaffold0012 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 154503 - 154558
Alignment:
Q  129 tgttggttatttgatgaaatatagtggttataacaagaatgaacaaagagaaaata 184  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  154503 tgttggttatttgatgaaatataatggttataacaaaaatgaacaaagagaaaata 154558  T

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