View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_high_15 (Length: 298)
Name: NF10488_high_15
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 54396116 - 54396394
Alignment:
| Q |
1 |
atagaaatatgatcaactagttccctttggttcagtgggtggcctctggtgggagtggtgcccatagaacgtgctttacagggaagaaatggcacatagg |
100 |
Q |
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| T |
54396116 |
atagaaatatgatcaactagttccctttggttcagtgggtggcctctggtgggagtggtgcccatagaacatgctttacagggaagaaatggcacatagg |
54396215 |
T |
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| Q |
101 |
agcttccccaggctttattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtct |
200 |
Q |
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| T |
54396216 |
agcttccccaggctttattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtct |
54396315 |
T |
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| Q |
201 |
ccatattgaccctttagaagaactttgaagaccttactccctatgtctaggtagtggcaatagtaaagagcataagggt |
279 |
Q |
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| T |
54396316 |
ccatattgaccctttagaagaactttgaagaccttactccctatgtctaggtagtggcaatagtaaagagcataagggt |
54396394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 54381246 - 54381510
Alignment:
| Q |
15 |
aactagttccctttggttcagtgggtggcctctggtgggagtggtgcccatagaacgtgctttacagggaagaaatggcacataggagcttccccaggct |
114 |
Q |
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| T |
54381246 |
aactagttccctcttgttcagttggtggcctctggtgggagtggcgcccatacaatgtgctttacagggaagaaatgacacagtggagcttccccaggct |
54381345 |
T |
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| Q |
115 |
ttattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccattatgtctccatattgaccctt |
214 |
Q |
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| T |
54381346 |
tcattccaagtagttgaaatataaaatgattaggattcatgtcagacgtgtctaggtggcaaatgcccaaagcatccatcatgtctccatattgacccct |
54381445 |
T |
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| Q |
215 |
tagaagaactttgaagaccttactccctatgtctaggtagtggcaatagtaaagagcataagggt |
279 |
Q |
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| T |
54381446 |
tagaagaactttgaagatcctactgcctatgtctaggtagtggcaatagtaaagagcataagggt |
54381510 |
T |
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