View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_high_19 (Length: 268)
Name: NF10488_high_19
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 36267693 - 36267449
Alignment:
| Q |
17 |
gaaacaattcatatcaattttaattttagttaaataaatggatgtaatttttgaagtgcaaagaggaagaccattctcaattgaagtaggcttcttcgac |
116 |
Q |
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| T |
36267693 |
gaaacaattcatatcaattttaattttagttaaataaatggatgtaatttttgaagtgcaaagaggaagaccattctcaattgaagtaggcttcttcgac |
36267594 |
T |
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| Q |
117 |
acaattttggaaatcaaagaaaaaattcaaaagtatcaaggaattccaatctccaaacaaaccttaatcttcaatggccaaattctcccagaagatggtg |
216 |
Q |
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| T |
36267593 |
acaattttggaaatcaaagaaaaaattcaaaagtatcaaggaattccaatctccaaacaaaccttaatcttcaatggccaaattctcccagaagatggtg |
36267494 |
T |
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| Q |
217 |
acatttggaaatgcgcaatttttcaaaactcgcgcattcatctca |
261 |
Q |
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| T |
36267493 |
acatttggaaatgcgcaatttttcaaaactcgcgcattcatctca |
36267449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 39 - 261
Target Start/End: Original strand, 6889765 - 6889988
Alignment:
| Q |
39 |
attttagttaaata-aatggatgtaatttttgaagtgcaaagaggaagaccattctcaattgaagtaggcttcttcgacacaattttggaaatcaaagaa |
137 |
Q |
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| T |
6889765 |
atttcagttaaatacaatggatgtaacttttgtagtgcacagaggcacaacattttcaatggaagtaggttttttcgacacaattttggagatcaaagaa |
6889864 |
T |
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| Q |
138 |
aaaattcaaaagtatcaaggaattccaatctccaaacaaaccttaatcttcaatggccaaattctcccagaagatggtgacatttggaaatgcgcaattt |
237 |
Q |
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| T |
6889865 |
aaagttgaaaaataccaaaggattccggtgtccaatcagacattaatcttcaatgatcaaattctccaagacaacgatgacatttggaaatgtgctattt |
6889964 |
T |
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| Q |
238 |
ttcaaaactcgcgcattcatctca |
261 |
Q |
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| T |
6889965 |
ttcaaaactctcgtattcacctca |
6889988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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