View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10488_high_2 (Length: 625)
Name: NF10488_high_2
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_high_2 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
| [»] scaffold1720 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 14 - 601
Target Start/End: Complemental strand, 17020266 - 17019679
Alignment:
| Q |
14 |
caaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020266 |
caaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttc |
17020167 |
T |
|
| Q |
114 |
atcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccata |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
17020166 |
atcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacctgatacaaagtgggttcagtcgacccata |
17020067 |
T |
|
| Q |
214 |
agaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaa |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17020066 |
agaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccataattgttgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaa |
17019967 |
T |
|
| Q |
314 |
caacaattacaaggggaagacccccatgacaaggactccatggagaaggtaccagaggttcaaaaaggcattgctgcaagccgttaagaccagactcttg |
413 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17019966 |
cagcaattacaaggggaagacccccatgacaaggactcaatggagaaggtaccagaggttcaaaaaggcattgcttcaagccgttaagaccagactcttg |
17019867 |
T |
|
| Q |
414 |
acataggaccgaatgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttg |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17019866 |
acataggaccgaatgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttg |
17019767 |
T |
|
| Q |
514 |
tttagccggagcatgagattaagaaggccttagtggctggcagttagcaaaagatggttaagagaccataaataaaaatactattgaa |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17019766 |
tttagccggagcatgagattaagaaggccttagtggctggcagttagaaaaagatggttaagagaccataaataaaaatactattgaa |
17019679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 15 - 274
Target Start/End: Original strand, 21312070 - 21312329
Alignment:
| Q |
15 |
aaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttca |
114 |
Q |
| |
|
|||||||| ||| ||||||||||||| |||||||||| ||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21312070 |
aaaggcctcgaaggttctatcccaaatcctaagaaaatagggaaatggtatggtgatcatagacctaagttttcctttacaaagagttatattcctttca |
21312169 |
T |
|
| Q |
115 |
tcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataa |
214 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |||||||||||||||||||||| || |||| ||||| | ||| |||||||||||||||||||| |
|
|
| T |
21312170 |
tcaataactcttcgaccaccaattatgtcaatcaaagtggtcaaggaaaagctttagtcccttatgcacccaaccaaaaatgggttcagtcgacccataa |
21312269 |
T |
|
| Q |
215 |
gaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgataacaa |
274 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| ||||||| || |||| |||||||| |
|
|
| T |
21312270 |
gaatgtgcagcatgggaagaacaatgtggtgaaaagaaacacaagtgttgtggataacaa |
21312329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 28 - 372
Target Start/End: Original strand, 18217574 - 18217921
Alignment:
| Q |
28 |
gttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttc |
127 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| | |||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18217574 |
gttctatcccaaaacctaagaaaagggggaaatggtctgctgatcatagacctaagtgttcttttacaaagagttatattcctttcatcaataactcttc |
18217673 |
T |
|
| Q |
128 |
gactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaacat |
227 |
Q |
| |
|
||| ||||||| |||||| |||||||||| |||||| |||| || ||| ||||| | ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
18217674 |
gaccaccaattatgtcaatcaaagtggtcagggaaaaactttggtcacttatgcaccaaaccaaaaatgggttcagtcgacccacaagaatgtgcaacat |
18217773 |
T |
|
| Q |
228 |
gggaaaaacaatgtggtgaaatgaaacaccagaattgttgat---aacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaattaca |
324 |
Q |
| |
|
||||| |||||| |||||||| ||||||| || |||| ||| |||||||||||| |||||||| ||| ||||||| |||||| | | || |||| |
|
|
| T |
18217774 |
gggaagaacaatatggtgaaaggaaacacaagtgttgtggataacaacaaaaatggtactgcctttgagtcgaagaagtatgcttatagaagaaactaca |
18217873 |
T |
|
| Q |
325 |
aggggaagacccccatgacaaggactccatggagaaggtaccagaggt |
372 |
Q |
| |
|
|||| || | || |||||||| |||| |||||| ||||||||||||| |
|
|
| T |
18217874 |
agggaaataatcctatgacaagaactcaatggaggaggtaccagaggt |
18217921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 442 - 574
Target Start/End: Complemental strand, 4598423 - 4598290
Alignment:
| Q |
442 |
ttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgt-ttagccggagcatgagattaagaagg |
540 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||| |||||| | |||||||||||| ||||| |||| |||||| || |||| |
|
|
| T |
4598423 |
ttccctaaccttagggaatgataaggatgatcgtcacatctaagcaaggtgcttagaattgaatcacggttgtgttagctggagtgtgagatcaaaaagg |
4598324 |
T |
|
| Q |
541 |
ccttagtggctggcagttagcaaaagatggttaa |
574 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||| |
|
|
| T |
4598323 |
ccttagtggctggtacttataaaaagatggttaa |
4598290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 68 - 175
Target Start/End: Original strand, 21307442 - 21307549
Alignment:
| Q |
68 |
tgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagct |
167 |
Q |
| |
|
|||||||||||| ||||| || || |||||||||||||| |||||||||||||||||||||| || |||| || || |||| ||||||||| |||||| |
|
|
| T |
21307442 |
tgatcataaaccaaagttctctttcactaagagttatatctctttcatcaataactcttcgaccactaattatgttaacaaaaatggtcaagggaaagct |
21307541 |
T |
|
| Q |
168 |
tttgttcc |
175 |
Q |
| |
|
| |||||| |
|
|
| T |
21307542 |
tatgttcc |
21307549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 36 - 130
Target Start/End: Complemental strand, 20863608 - 20863514
Alignment:
| Q |
36 |
ccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgac |
130 |
Q |
| |
|
|||||| | ||||||||||| ||||||| | | ||| || ||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20863608 |
ccaaaatccaagaaaagaggaaaatggtctgttaatcttagaccaaagttctcttttactaagagttatattcctttcatcaataactcttcgac |
20863514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 22616190 - 22616320
Alignment:
| Q |
45 |
aagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatttcgtca |
144 |
Q |
| |
|
||||||||||| ||||||| | |||||||| ||| || || || |||||||||||||||||| |||||||||||||| |||||| || |||| || | |
|
|
| T |
22616190 |
aagaaaagaggaaaatggtatgctgatcatagacccaaattctcttttactaagagttatatttttttcatcaataactattcgaccactaattatgtta |
22616289 |
T |
|
| Q |
145 |
ataaaagtggtcaaggaaaagcttttgttcc |
175 |
Q |
| |
|
|||| | ||||||||| ||| |||||||||| |
|
|
| T |
22616290 |
ataagaatggtcaagggaaaacttttgttcc |
22616320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 21306594 - 21306675
Alignment:
| Q |
284 |
tgcctttgcgtcaaagaagtttgcttacaacaacaattacaaggggaagacccccatgacaaggactccatggagaaggtac |
365 |
Q |
| |
|
|||||||| ||| | |||||||||||| | ||||| |||||||| |||| ||||||||||| |||| ||||||||||||| |
|
|
| T |
21306594 |
tgcctttgagtcgaggaagtttgcttatagaaacaactacaagggaaagaatcccatgacaagaactcaatggagaaggtac |
21306675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 22616346 - 22616398
Alignment:
| Q |
195 |
tgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaa |
247 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
22616346 |
tgggttcattcgacccataagaatgttcagtatgggaagaacaatgtggtgaa |
22616398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 16 - 395
Target Start/End: Complemental strand, 35505 - 35130
Alignment:
| Q |
16 |
aaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcat |
115 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
35505 |
aaggtcttgaaagttccatcccaaaacctaagaaaagaaggaaatggtctggtgatcatagacctaagttttcctttattaagagctatattcctttcat |
35406 |
T |
|
| Q |
116 |
caataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataag |
215 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||| ||| ||| ||||||||||||||||| ||||| || | ||| |||||||||||||| |||||| |
|
|
| T |
35405 |
caataactcttcgaccaccaattacgtctataaaaggggtaaagaaaaagcttttgttccttatgcacctggtcaaaaatgggttcagtcgactcataag |
35306 |
T |
|
| Q |
216 |
aatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaaca |
315 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || |||||| | |||| || ||||||| |||||||| ||||||||||| ||||||||||| |
|
|
| T |
35305 |
aatgtgcaacatgggaaaaataatgtggtgaaagaaagcaccagtactgtttat-----aaatggtattgcctttgagtcaaagaagtatgcttacaaca |
35211 |
T |
|
| Q |
316 |
acaattacaaggggaagacccccatgacaaggactccatggagaaggtaccagaggttc-aaaaaggcattgctgcaagcc |
395 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| |||||||||||| ||| || | ||||||||||||||||||||| |
|
|
| T |
35210 |
acaattacaaggggaagaaccccatgacaagaactcaatggagaaggtagtagatgtccaaaaaaggcattgctgcaagcc |
35130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 7e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 15 - 395
Target Start/End: Complemental strand, 22804356 - 22803977
Alignment:
| Q |
15 |
aaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttca |
114 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||| || |||| |
|
|
| T |
22804356 |
aaaggcgttgaaagttctatcccaaaccctaagaaaagagggaaatggtatggtgatcatagacctaagttttcctttacaaagagtt-----ccattca |
22804262 |
T |
|
| Q |
115 |
tcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataa |
214 |
Q |
| |
|
| ||||||||||| || ||||||| |||||| ||| ||||| ||||||||||||| ||||||| ||||| | | || |||||||||||||||||||| |
|
|
| T |
22804261 |
ttaataactcttctaccaccaattacgtcaacaaaggtggtaaaggaaaagctttggttccttatgcacctaaccagaaatgggttcagtcgacccataa |
22804162 |
T |
|
| Q |
215 |
gaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccag---aattgttgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttac |
311 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||| || || |||||||| |||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
22804161 |
gaatgtgcaacatgggaagaacaatgtggtgaaaagaagcaatagtactattgttgacaacaaaaatggtactgcctttgagtcaaagaagtatgcttac |
22804062 |
T |
|
| Q |
312 |
aacaacaattacaaggggaagacccccatgacaaggactccatggagaaggtaccagaggttc-aaaaaggcattgctgcaagcc |
395 |
Q |
| |
|
|||||||| ||||| || |||| ||||||||||||||||| |||||||||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
22804061 |
aacaacaactacaaaggaaagaaccccatgacaaggactcaatggagaaggtaccagaggtccaaaaaaggcgttgctgcaagcc |
22803977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 490 - 607
Target Start/End: Complemental strand, 17989904 - 17989787
Alignment:
| Q |
490 |
atgcttataccaaaatcacggttgtttagccggagcatgagattaagaaggccttagtggctggcagttagcaaaagatggttaagagaccataaataaa |
589 |
Q |
| |
|
||||||| | || ||||| |||||||| ||||||| || ||| || ||||||||| ||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
17989904 |
atgcttagaacagaatcatggttgttttgccggagtgtgggatcaaaaaggccttattggctaacatttagcaaaagatggttaagagaccattaataaa |
17989805 |
T |
|
| Q |
590 |
aatactattgaaatactt |
607 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
17989804 |
gatactatggaaatactt |
17989787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 20062466 - 20062561
Alignment:
| Q |
43 |
ctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactaccaatt |
138 |
Q |
| |
|
||||||| ||||| ||||||| |||||||| ||| ||||| || |||||||||||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
20062466 |
ctaagaagagaggaaaatggtctactgatcatagaccaaagttctcttttactaagagttatattcctttcatcaataattcttcaaccaccaatt |
20062561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 21379892 - 21379756
Alignment:
| Q |
36 |
ccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactcttcgactacca |
135 |
Q |
| |
|
|||||| | ||||||||||| |||||||| | |||||||| ||| |||||||| || || || ||||||||| |||||||||||||||||| || || | |
|
|
| T |
21379892 |
ccaaaatcaaagaaaagaggaaaatggtttgttgatcatagaccaaagttttcattcaccaaacgttatattcatttcatcaataactcttcaaccacta |
21379793 |
T |
|
| Q |
136 |
atttcgtcaataaaagtggtcaaggaaaagcttttgt |
172 |
Q |
| |
|
|| || ||||| | ||||||||| ||| ||||||| |
|
|
| T |
21379792 |
gttatgttaataagaatggtcaagggaaaacttttgt |
21379756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 5e-76; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 24987459 - 24987817
Alignment:
| Q |
15 |
aaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttca |
114 |
Q |
| |
|
|||||||| || |||| |||||||||||||||||||| || || |||| |||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
24987459 |
aaaggcctcaaaggttccatcccaaaacctaagaaaaggggaaagtggtctagtgatcatagacctaagttttcctttacaaagagttatattcctttca |
24987558 |
T |
|
| Q |
115 |
tcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataa |
214 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||| | ||| |||||||| || |||||||| |
|
|
| T |
24987559 |
tcaataactcttcgaccaccaattatgtcaataaaagtggtcaaggaaaagctttagtcccttatgcacccaaccaaaaatgggttcaatctacccataa |
24987658 |
T |
|
| Q |
215 |
gaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttg---ataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttac |
311 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||| ||| |||||| |||||| |||||||||||||| | |||||| ||| |||||||||||||| |
|
|
| T |
24987659 |
gaatgtgcaacatggtaagaacaatgcggtgaaaagaaccaccagtgttgttgataataacaaaaatggtactacctttgagtcgaagaagtttgcttat |
24987758 |
T |
|
| Q |
312 |
aacaacaattacaaggggaagacccccatgacaaggactccatggagaaggtaccagag |
370 |
Q |
| |
|
| |||||| |||||||| || | ||||||| ||| |||| |||||||||||||||||| |
|
|
| T |
24987759 |
agcaacaactacaagggaaataatcccatgataagaactcaatggagaaggtaccagag |
24987817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 26 - 372
Target Start/End: Original strand, 25566433 - 25566782
Alignment:
| Q |
26 |
aagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatcaataactct |
125 |
Q |
| |
|
|||| ||||||||||||||||||| | |||||||||| | |||||||| || ||||||||| ||||| ||||| |||||||||||||| ||||||||| |
|
|
| T |
25566433 |
aagtcctatcccaaaacctaagaagaaggggaaatggtctggtgatcatagacataagttttcatttacaaagagctatattcctttcattaataactct |
25566532 |
T |
|
| Q |
126 |
tcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaatgtgcaac |
225 |
Q |
| |
|
||||| ||||||| |||||| ||| |||||||||||||||||| || |||| ||||| | | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25566533 |
tcgaccaccaattatgtcaatcaaattggtcaaggaaaagctttagtcccttatgcacctaaccaaaaatgggttcagtcgacccataagaatgtgcaac |
25566632 |
T |
|
| Q |
226 |
atgggaaaaacaatgtggtgaaatgaaacaccagaattgt---tgataacaaaaatggtgatgcctttgcgtcaaagaagtttgcttacaacaacaatta |
322 |
Q |
| |
|
||||||| |||||| |||||| | |||||||||| |||| | ||||||||||||||| | |||||| || | |||||||| ||| | ||||| || |
|
|
| T |
25566633 |
atgggaagaacaatatggtgacaagaaacaccagtgttgtggataataacaaaaatggtgttccctttgaatcgaggaagtttgtttatagcaacagttg |
25566732 |
T |
|
| Q |
323 |
caaggggaagacccccatgacaaggactccatggagaaggtaccagaggt |
372 |
Q |
| |
|
||| || |||| | ||||||||| | || |||||| ||||||| ||||| |
|
|
| T |
25566733 |
caaaggaaagaatcacatgacaagaaatcaatggaggaggtaccggaggt |
25566782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 445 - 582
Target Start/End: Complemental strand, 25579078 - 25578941
Alignment:
| Q |
445 |
cctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagcatgagattaagaaggcctt |
544 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||| ||| |||||||||| |||||| | |
|
|
| T |
25579078 |
cctagccttagggaatgatgaggatgatcatcacatctatgcaaaatgcttggagcaaaaccacggttgtttagccagagtatgagattaaaaaggccat |
25578979 |
T |
|
| Q |
545 |
agtggctggcagttagcaaaagatggttaagagaccat |
582 |
Q |
| |
|
||||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
25578978 |
agtggttggcagttaacaaaagatggttaagaaaccat |
25578941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 429 - 582
Target Start/End: Original strand, 25567721 - 25567875
Alignment:
| Q |
429 |
tggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttg-tttagccggagcat |
527 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||| |||||||| ||||||||||||| || |||| | | ||||||||||| ||||||||||| || |
|
|
| T |
25567721 |
tggaaaatctgaattccctaaccttagggaatgctgaagatgatcaccacatctaagcaagattcttagagctgaatcacggttgttttagccggagtat |
25567820 |
T |
|
| Q |
528 |
gagattaagaaggccttagtggctggcagttagcaaaagatggttaagagaccat |
582 |
Q |
| |
|
| || || |||||||| ||||| | | || ||||||||||||||||| ||||| |
|
|
| T |
25567821 |
aaaatcaaacaggccttaatggctagtacttggcaaaagatggttaagaaaccat |
25567875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 8e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 15 - 372
Target Start/End: Complemental strand, 24900192 - 24899832
Alignment:
| Q |
15 |
aaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttca |
114 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| || ||||||| | |||||||| ||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
24900192 |
aaaggcctcgaagattctatcccaaaacctaagaaaaggggcaaatggtatggtgatcatagacctaagtttttctttacaaagagttatattcctttca |
24900093 |
T |
|
| Q |
115 |
tcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataa |
214 |
Q |
| |
|
|||||||||||||||| | ||||| |||||||| ||||||||| ||||| |||| ||||||| ||||| | || ||||||||||| |||||||| |
|
|
| T |
24900092 |
tcaataactcttcgaccatcaattatgtcaataagagtggtcaacgaaaaactttggttccttatgcacccaaccagaaatgggttcagtctacccataa |
24899993 |
T |
|
| Q |
215 |
gaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgat---aacaaaaatggtgatgcctttgcgtcaaagaagtttgcttac |
311 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||| || ||| |||||||| ||||||||| || | |||||| || || |||| |||||| |
|
|
| T |
24899992 |
gaatgtgcaacatgggaagaacaatgtggtgaaaagaagcatcagtgttgttgataacaacaaaaattgtactacctttgagttgaaaaagtatgcttat |
24899893 |
T |
|
| Q |
312 |
aacaacaattacaaggggaagacccccatgacaaggactccatggagaaggtaccagaggt |
372 |
Q |
| |
|
| |||||| |||||||| |||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24899892 |
agcaacaactacaagggaaagaatcccatgacaaggactcaatggagaaggtaccagaggt |
24899832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 195 - 258
Target Start/End: Complemental strand, 22261515 - 22261452
Alignment:
| Q |
195 |
tgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacacca |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22261515 |
tgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaaagaaacacca |
22261452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 538 - 607
Target Start/End: Original strand, 919383 - 919452
Alignment:
| Q |
538 |
aggccttagtggctggcagttagcaaaagatggttaagagaccataaataaaaatactattgaaatactt |
607 |
Q |
| |
|
|||||||||||||| | | || ||||||||||||||||| ||||| || ||| |||||||||||| |||| |
|
|
| T |
919383 |
aggccttagtggctagtatttggcaaaagatggttaagataccattaacaaagatactattgaaacactt |
919452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 135; Significance: 5e-70; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 15 - 366
Target Start/End: Original strand, 79684 - 80037
Alignment:
| Q |
15 |
aaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttca |
114 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||||||||||||||||||||| | |||||||| |||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
79684 |
aaaggcctcgaaggttctaccccaaaacctaagaaaagagggaaatggtctggtgatcatagaccttagttttcctttacaaagagttatattcctttca |
79783 |
T |
|
| Q |
115 |
tcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataa |
214 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||| || |||||||||||| ||||||||| ||||| ||| ||| |||||||| | |||||| || |
|
|
| T |
79784 |
tcaataactcttcgaccacaaattatgtcaataaaattgttcaaggaaaagc--ttgttccttatgcaccgaataaaaaatgggttcaattgacccaaaa |
79881 |
T |
|
| Q |
215 |
gaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgat---aacaaaaatg-gtgatgcctttgcgtcaaagaagtttgctta |
310 |
Q |
| |
|
||||| ||| ||||||| ||||||||||| ||| ||||||||| |||| ||| |||||||||| || | | |||| |||||||||||||||||| |
|
|
| T |
79882 |
taatgtacaaaatgggaagaacaatgtggtaaaaggaaacaccaatgttgtggataaaaacaaaaatgtgtacttcatttgagtcaaagaagtttgctta |
79981 |
T |
|
| Q |
311 |
caacaacaattacaaggggaagacccccatgacaaggactccatggagaaggtacc |
366 |
Q |
| |
|
| ||||||||||||||| |||| | ||||||||| |||| |||||||||||||| |
|
|
| T |
79982 |
tagcaacaattacaagggaaagaatcacatgacaagaactcaatggagaaggtacc |
80037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 442 - 520
Target Start/End: Original strand, 80114 - 80192
Alignment:
| Q |
442 |
ttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagcc |
520 |
Q |
| |
|
||||||| || |||||||||| ||||||| ||||||||||||||||| ||||||| | || ||||||| |||||||||| |
|
|
| T |
80114 |
ttccctagccgtagggaatgacgaggatggtcatcacatctaagcaagatgcttagaacataatcacgattgtttagcc |
80192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 5e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 16922784 - 16922410
Alignment:
| Q |
15 |
aaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttca |
114 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||| |||||||||| | |||||||| ||||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
16922784 |
aaaggcctcgaaggttctatcccaaaacctaagaaaagggggaaatggtctgctgatcatatacctacgttttcctttacaaagagttatattcatttca |
16922685 |
T |
|
| Q |
115 |
tcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataa |
214 |
Q |
| |
|
||||||||||||| || |||||| |||||| | |||||||| |||||| |||| || |||| ||||| | ||| |||||||| |||||||| || |
|
|
| T |
16922684 |
tcaataactcttcaacctccaattatgtcaatcagagtggtcacggaaaaactttggtcccttatgcaccaaaccaaaaatgggttcaatcgacccacaa |
16922585 |
T |
|
| Q |
215 |
gaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgat---aacaaaaatggtgatgcctttgcgtcaaagaagtttgcttac |
311 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||| |||||||||| |||| ||| |||||||||||| |||||||| ||| | ||||||| || | |
|
|
| T |
16922584 |
gaatgtgcaacatgggaagaacaatatggtgaaaagaaacaccagtgttgtggataacaacaaaaatggtactgcctttgagtcgaggaagttttctcat |
16922485 |
T |
|
| Q |
312 |
aacaacaattacaaggggaagacccccatgacaaggactccatggagaaggtaccagaggttcaa-aaaggcatt |
385 |
Q |
| |
|
||||||| ||||||| || | ||||||||||| |||| ||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
16922484 |
tacaacaactacaaggtaaataatcccatgacaagaactcagtggaggaggtaccagaggtccaagaaaggcatt |
16922410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 2284850 - 2284591
Alignment:
| Q |
15 |
aaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttca |
114 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
2284850 |
aaaggtctcgaaggttctatcccaaaacctaagaaaagagggaaatggtatggtgatcatagacctaagttttcctttacaaagagttatattcctttga |
2284751 |
T |
|
| Q |
115 |
tcaataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataa |
214 |
Q |
| |
|
||||||||||||| || ||||| | || ||| |||||||||||||||||| ||| || |||| ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
2284750 |
tcaataactcttccaccaccaactatgttaatcaaagtggtcaaggaaaagttttagtcccttatgcacccaaccaaaattgggttcagtcaacccataa |
2284651 |
T |
|
| Q |
215 |
gaatgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccagaattgttgataacaa |
274 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||| |||||||||| |||| |||||||| |
|
|
| T |
2284650 |
gtatgtgcaacatgggaagaacaatgtggtgaaaagaaacaccagtgttgtggataacaa |
2284591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 259
Target Start/End: Complemental strand, 17136506 - 17136265
Alignment:
| Q |
18 |
ggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattcctttcatca |
117 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| |||||||||| | ||| |||| |||||||||||| || || |||||||||||| ||||||| |
|
|
| T |
17136506 |
ggcctcgaaggttctatcccaaaacctaagaaaatggggaaatggtctgctgaccatagacctaagttttctttcaccaagagttatatttatttcatcg |
17136407 |
T |
|
| Q |
118 |
ataactcttcgactaccaatttcgtcaataaaagtggtcaaggaaaagcttttgttccttgtgcacgtgatacaaagtgggttcagtcgacccataagaa |
217 |
Q |
| |
|
|||||||||||| ||||||| |||||| | ||||||||||||||| ||| || |||| ||||| | ||| |||||| |||||||||| ||||| |
|
|
| T |
17136406 |
ataactcttcgatcaccaattatgtcaatcagagtggtcaaggaaaaattttggtcccttatgcaccaaaccaaaaatgggttaagtcgacccacaagaa |
17136307 |
T |
|
| Q |
218 |
tgtgcaacatgggaaaaacaatgtggtgaaatgaaacaccag |
259 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
17136306 |
tgtgcaacatggggaaaacaatgtggtgaaaagaaacaccag |
17136265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 442 - 607
Target Start/End: Complemental strand, 2283559 - 2283394
Alignment:
| Q |
442 |
ttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagcatgagattaagaaggc |
541 |
Q |
| |
|
||||||||||||||| ||||| | ||| |||||||||||||||||| ||| ||||| | ||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
2283559 |
ttccctaaccttaggaaatgacaaagataatcatcacatctaagcaagatgattataactggatcacggttgtttagccggagtgtgagatcaaaaaggc |
2283460 |
T |
|
| Q |
542 |
cttagtggctggcagttagcaaaagatggttaagagaccataaataaaaatactattgaaatactt |
607 |
Q |
| |
|
|||||||||||| ||| || ||||||||| |||||||| |||||| ||||||| |||| |||| |
|
|
| T |
2283459 |
cttagtggctggtgtgtagtaagagatggttaggagaccattaataaagatactatcgaaacactt |
2283394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 451 - 575
Target Start/End: Complemental strand, 17136087 - 17135963
Alignment:
| Q |
451 |
cttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagcatgagattaagaaggccttagtggc |
550 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| ||||||| | ||||||| |||||||||||| | |||||| |||| |||| ||||||| |
|
|
| T |
17136087 |
cttagggaatgatgaaggtgatcatcacatctaagcaagatgcttagaatcaaatcacagttgtttagccgaaatgtgagatcaagagggccatagtggc |
17135988 |
T |
|
| Q |
551 |
tggcagttagcaaaagatggttaag |
575 |
Q |
| |
|
||| | |||| |||||||||||||| |
|
|
| T |
17135987 |
tggtacttagtaaaagatggttaag |
17135963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 7e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 425 - 607
Target Start/End: Original strand, 11885836 - 11886018
Alignment:
| Q |
425 |
aatgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggag |
524 |
Q |
| |
|
|||||||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
11885836 |
aatgtggagaatctgaattccctagccttagggaatgatgaggatgatcatcacatctaagaaaaatgcatagaacaaaatcacggttgtttagccggag |
11885935 |
T |
|
| Q |
525 |
catgagattaagaaggccttagtggctggcagttagcaaaagatggttaagagaccataaataaaaatactattgaaatactt |
607 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||| ||||||||| |
|
|
| T |
11885936 |
catgagatcaagaaggccttagtggcgagcagttagcaaaagatggttaagagaccattaatagagatactatcgaaatactt |
11886018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 405 - 576
Target Start/End: Original strand, 19886079 - 19886250
Alignment:
| Q |
405 |
agactcttgacataggaccgaatgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaa |
504 |
Q |
| |
|
||||||| |||| || ||| |||| ||| |||| | ||||||| ||||||||||||||| | |||||||||||| |||| || |||| | || || |
|
|
| T |
19886079 |
agactctcgacacagaacctaatgccgaagatctgaattccctactcttagggaatgatgaatacagtcatcacatctaggcaagattcttagaacataa |
19886178 |
T |
|
| Q |
505 |
tcacggttgtttagccggagcatgagattaagaaggccttagtggctggcagttagcaaaagatggttaaga |
576 |
Q |
| |
|
||||||||||||||||||| | |||||| ||||||||| |||||||||| | |||||||| ||||||||||| |
|
|
| T |
19886179 |
tcacggttgtttagccggatcttgagataaagaaggccctagtggctggtatttagcaaatgatggttaaga |
19886250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 14943625 - 14943572
Alignment:
| Q |
195 |
tgggttcagtcgacccataagaatgtgcaacatgggaaaaacaatgtggtgaaa |
248 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||| ||||| ||||||||| |
|
|
| T |
14943625 |
tgggttcagtcgacccataaaaatgttcagtatgggaagaacaaagtggtgaaa |
14943572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 5e-39; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 452 - 582
Target Start/End: Complemental strand, 20246200 - 20246070
Alignment:
| Q |
452 |
ttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagcatgagattaagaaggccttagtggct |
551 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
20246200 |
ttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggtatatgagattaagaaggccatagtggct |
20246101 |
T |
|
| Q |
552 |
ggcagttagcaaaagatggttaagagaccat |
582 |
Q |
| |
|
| || ||||||||||||||||| |||||||| |
|
|
| T |
20246100 |
gacatttagcaaaagatggttatgagaccat |
20246070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 452 - 582
Target Start/End: Complemental strand, 22140184 - 22140054
Alignment:
| Q |
452 |
ttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagcatgagattaagaaggccttagtggct |
551 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
22140184 |
ttagggaatgatgaggatgatcataacatctaagcaaagtgcttagagcaaaatcacggttgtttagctggtatatgagattaagaaggccatagtggct |
22140085 |
T |
|
| Q |
552 |
ggcagttagcaaaagatggttaagagaccat |
582 |
Q |
| |
|
| || ||||||||||||||||| |||||||| |
|
|
| T |
22140084 |
gacatttagcaaaagatggttatgagaccat |
22140054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 426 - 557
Target Start/End: Complemental strand, 20195880 - 20195748
Alignment:
| Q |
426 |
atgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagc |
525 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||| |||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
20195880 |
atgtggaaaatctaagttccctagctttagagaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagc |
20195781 |
T |
|
| Q |
526 |
atgagattaagaaggcctt-agtggctggcagt |
557 |
Q |
| |
|
|| |||||||||||||||| |||||| |||||| |
|
|
| T |
20195780 |
attagattaagaaggccttaagtggccggcagt |
20195748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 426 - 557
Target Start/End: Complemental strand, 22089903 - 22089771
Alignment:
| Q |
426 |
atgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggagc |
525 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||| |||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
22089903 |
atgtggaaaatctaagttccctagctttagagaatgatgaggatgatcatcacatcaaagaaaaatgcttagagaaaaatcatggttgtttagccggagc |
22089804 |
T |
|
| Q |
526 |
atgagattaagaaggcctt-agtggctggcagt |
557 |
Q |
| |
|
|| |||||||||||||||| |||||| |||||| |
|
|
| T |
22089803 |
attagattaagaaggccttaagtggccggcagt |
22089771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 425 - 576
Target Start/End: Complemental strand, 25948199 - 25948048
Alignment:
| Q |
425 |
aatgtggaaaatctaagttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggag |
524 |
Q |
| |
|
||||||||| |||| | ||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||| | || ||| ||||||||||||||| | |
|
|
| T |
25948199 |
aatgtggaagatctgaattccctagtcttagggaatgatgaagatggtcatcacatctaagcaagatgcttagaacagaataacggttgtttagccgtat |
25948100 |
T |
|
| Q |
525 |
catgagattaagaaggccttagtggctggcagttagcaaaagatggttaaga |
576 |
Q |
| |
|
| |||||| ||||||||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
25948099 |
cttgagataaagaaggccttagaggctggtatttagcaaaagatggttaaga |
25948048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1720 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold1720
Description:
Target: scaffold1720; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 677 - 770
Alignment:
| Q |
15 |
aaaggccttgaaagttctatcccaaaacctaagaaaagagggaaatggttcgatgatcataaacctaagttttcctttactaagagttatattc |
108 |
Q |
| |
|
||||||||||| ||| | ||| ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
677 |
aaaggccttgagagtaccatctcaaaacctaagaaaagaggaaaatggtctagtgatcataaacctaggttttcctttacaaagagttatattc |
770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 524
Target Start/End: Original strand, 111742 - 111824
Alignment:
| Q |
442 |
ttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggag |
524 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||||||||| ||| ||| | ||||||||||||| ||||||||| |
|
|
| T |
111742 |
ttccctaactttggggaatgatgaagatgatcatcacatctaagcaggatgattagaatcaaatcacggttgtgtagccggag |
111824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 524
Target Start/End: Complemental strand, 63602 - 63520
Alignment:
| Q |
442 |
ttccctaaccttagggaatgatgaggatgatcatcacatctaagcaaaatgcttataccaaaatcacggttgtttagccggag |
524 |
Q |
| |
|
|||||||| ||| || |||||||| ||||||||||| ||||||||| ||||||| | | |||||| |||||| ||| ||||| |
|
|
| T |
63602 |
ttccctaagcttgggaaatgatgaagatgatcatcaagtctaagcaagatgcttagaactaaatcatggttgtgtagtcggag |
63520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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