View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_high_20 (Length: 265)
Name: NF10488_high_20
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 43 - 250
Target Start/End: Original strand, 32640033 - 32640240
Alignment:
| Q |
43 |
caggcatgatgcaaaagaagtataatggtatggaaaaatgattgagaatttggataaatggtatggtgtatttatagaggtcaagtgagaaaacgnnnnn |
142 |
Q |
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| T |
32640033 |
caggcatgatgcaaaagaagtataatggtatggaaaaatgattgagaatttggatgaatggtatggtgtatttatagaggtcaagtgagaaaacgaaaaa |
32640132 |
T |
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| Q |
143 |
nntagtaatataaactcaataccgttagaccacatatggttttatcatttgtatgttgagggtttgtaattaggatttctctaacacactgaaattaagg |
242 |
Q |
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| T |
32640133 |
aatagtaatataaactcaataccgttagaccacatatggttttatcatttgtaggttgagggtttgtaattaggatttctctaacacactgaaatttagg |
32640232 |
T |
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| Q |
243 |
tagttttt |
250 |
Q |
| |
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|||||||| |
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| T |
32640233 |
tagttttt |
32640240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 32635435 - 32635349
Alignment:
| Q |
51 |
atgcaaaagaagtataatggtatggaaaaatgattgagaatttggataaatggtatggtgtatttatagaggtcaagtgagaaaacg |
137 |
Q |
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| T |
32635435 |
atgcaaaagaagtataatggtatgaaaaaatgattttgaatttggatgaatggtatggtgtatttatagaggtcaagtgagaaaacg |
32635349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 377349 - 377294
Alignment:
| Q |
51 |
atgcaaaagaagtataatggtatggaaaaatgattgagaatttggataaatggtat |
106 |
Q |
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| T |
377349 |
atgcaaaagaagtagaaatgtatgaaaaaatgattgtgaatttggatgaatggtat |
377294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 38349700 - 38349628
Alignment:
| Q |
47 |
catgatgcaaaagaagtataatggtatggaaaaatgattgagaatttggataaatggtatggtgtatttatag |
119 |
Q |
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|||||| ||||| ||||| || ||||| ||||||||||| |||||||||| ||| |||||||| ||| |||| |
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| T |
38349700 |
catgattcaaaataagtagaaatgtatgaaaaaatgattgtgaatttggatgaatagtatggtgaattaatag |
38349628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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