View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_high_23 (Length: 201)
Name: NF10488_high_23
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 3121158 - 3120977
Alignment:
| Q |
1 |
ttcactttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaattccagttgaaaagttatgtgatggtgcaaaagttgaagg |
100 |
Q |
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| T |
3121158 |
ttcactttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaattccagttgaaaagttatgtgatggtgcaaaagttgaagg |
3121059 |
T |
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| Q |
101 |
ctttttccccattcttaatactaatggaaaacccttcaagaccgaaaccgttttgagcttatcaattcagtatactcctatt |
182 |
Q |
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| T |
3121058 |
ctttttccccattcttaatactaatggaaaacccttcaagaccgaaaccgttttgagcttatcaattcagtatactcctatt |
3120977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 3115302 - 3115128
Alignment:
| Q |
1 |
ttcactttgttgtaaaagacagtgatattgttggttcacagcttattggtgcagttggaattccagttgaaaagttatgtgatggtgcaaaagttgaagg |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
3115302 |
ttcactttgttgtaaaagacaatgatattgttggttcacaggttattggtgcagttggaattccagtagaaaaattatgtgatggtacaaaagttgaagg |
3115203 |
T |
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| Q |
101 |
ctttttccccattcttaatactaatggaaaacccttcaagaccgaaaccgttttgagcttatcaattcagtatac |
175 |
Q |
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|||||| |||||||| |||||||||||||||||||| ||||| ||| | |||||||||| |||||||||||||| |
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| T |
3115202 |
cttttttcccattctcaatactaatggaaaaccctttaagactgaagcaattttgagcttgtcaattcagtatac |
3115128 |
T |
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