View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_high_3 (Length: 622)
Name: NF10488_high_3
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 167 - 318
Target Start/End: Complemental strand, 348094 - 347943
Alignment:
| Q |
167 |
acacatagatttcgttctattaaataaatggtacatctgaccaacaacaaaaattaaatggtgcatttgnnnnnnnnngttacattgaaaactaaatgta |
266 |
Q |
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| T |
348094 |
acacatagattgcgttctattaaataaatggtacatctgaccaacaacaaaaattaaatggtgcatttgaaaaaaaaagttacattgaaaactaaatgta |
347995 |
T |
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| Q |
267 |
acaataacatttttctcaaatctgatagttactggcaacataatgaatattc |
318 |
Q |
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| T |
347994 |
acaataacatttttctcaaatctgatagttactggcaacataatgaatattc |
347943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 378 - 546
Target Start/End: Complemental strand, 347884 - 347730
Alignment:
| Q |
378 |
gatgcaagttatatggtttgnnnnnnnattagaggaagttatatgatttggttctatttggactttgctattccaattcaaaatactagtttatttgggg |
477 |
Q |
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| T |
347884 |
gatgcaagttatatggtttgttttt--attagaggaagttatatgatttggttctatttggactttgctagt----------atactagtttatttgggg |
347797 |
T |
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| Q |
478 |
tgagagagtataatagttcatctattcaacgtaaaacttctaacgttgtcgcttgaagtgtaagtggta |
546 |
Q |
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| T |
347796 |
tgagag--tataatagttcatctattcaacgtaaaacttctaacgttgtcgcttgaagtgtaagtggta |
347730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 348240 - 348166
Alignment:
| Q |
18 |
tttaggacattgattaaagattctattatacgaaagtttattttaaaaacataagatcataacgaatattcaacttt |
94 |
Q |
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| T |
348240 |
tttagaacattgattaaagattctattatacgaaagtttattttgaaaacataagatcata--gaatattcaacttt |
348166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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