View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10488_high_5 (Length: 542)

Name: NF10488_high_5
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10488_high_5
NF10488_high_5
[»] chr2 (39 HSPs)
chr2 (20-530)||(10372259-10372769)
chr2 (20-525)||(10353515-10354032)
chr2 (20-200)||(9292638-9292815)
chr2 (20-201)||(9321697-9321878)
chr2 (256-525)||(10348185-10348454)
chr2 (20-136)||(8572763-8572879)
chr2 (20-198)||(9060360-9060535)
chr2 (260-396)||(10336367-10336503)
chr2 (20-136)||(9316793-9316912)
chr2 (20-97)||(10336621-10336698)
chr2 (20-97)||(7114907-7114984)
chr2 (258-398)||(9316558-9316698)
chr2 (245-488)||(9321407-9321659)
chr2 (20-136)||(14551091-14551206)
chr2 (251-394)||(8572958-8573101)
chr2 (211-398)||(9283603-9283790)
chr2 (256-398)||(9357710-9357852)
chr2 (326-398)||(9275051-9275123)
chr2 (256-483)||(9329035-9329271)
chr2 (20-90)||(10348620-10348690)
chr2 (20-97)||(9275333-9275410)
chr2 (256-364)||(7115110-7115218)
chr2 (21-88)||(9357935-9358002)
chr2 (426-488)||(9357614-9357676)
chr2 (329-397)||(12005658-12005726)
chr2 (247-398)||(9292458-9292609)
chr2 (425-488)||(10336275-10336338)
chr2 (23-88)||(9329418-9329483)
chr2 (20-96)||(9283436-9283512)
chr2 (432-488)||(9283833-9283889)
chr2 (20-87)||(7612716-7612783)
chr2 (426-488)||(9292359-9292421)
chr2 (328-384)||(8579032-8579088)
chr2 (329-376)||(11987021-11987068)
chr2 (331-374)||(16269456-16269499)
chr2 (329-398)||(9060666-9060735)
chr2 (426-483)||(9060772-9060829)
chr2 (430-483)||(9274948-9275001)
chr2 (43-95)||(8577708-8577760)
[»] chr4 (3 HSPs)
chr4 (20-138)||(26575648-26575766)
chr4 (238-525)||(26575267-26575563)
chr4 (39-97)||(561980-562038)
[»] chr3 (2 HSPs)
chr3 (20-385)||(37463041-37463409)
chr3 (424-488)||(37462929-37462993)
[»] chr8 (2 HSPs)
chr8 (260-397)||(41966185-41966322)
chr8 (43-113)||(41966007-41966077)
[»] scaffold0667 (2 HSPs)
scaffold0667 (20-113)||(5253-5346)
scaffold0667 (256-481)||(4921-5149)
[»] chr1 (5 HSPs)
chr1 (29-113)||(29452622-29452706)
chr1 (29-136)||(29467096-29467203)
chr1 (32-136)||(29442633-29442737)
chr1 (29-113)||(29424008-29424092)
chr1 (427-488)||(29452951-29453012)
[»] chr5 (1 HSPs)
chr5 (20-82)||(36225575-36225637)


Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 530
Target Start/End: Complemental strand, 10372769 - 10372259
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgca 119  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372769 cgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgca 10372670  T
Q  120 aattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatcgaggattccactcaaccatcctttcacggcgggtaacaccagcaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10372669 aattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatcgaggattccactcaaccatcctttcacggcgggtaacaccagcaa 10372570  T
Q  220 catcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgt 319  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10372569 cattgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgt 10372470  T
Q  320 gaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccccacaatcaaag 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  10372469 gaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcctattcttgaccccacaatcagag 10372370  T
Q  420 cctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatga 519  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10372369 cctccttatgcgttcatggcttcggttttgattctttatccggcgatcacaaactcctcagaatctcttacttaatcgaccaccaaagcactttttatga 10372270  T
Q  520 tccacaggttc 530  Q
    |||||| ||||    
T  10372269 tccacatgttc 10372259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 20 - 525
Target Start/End: Complemental strand, 10354032 - 10353515
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgca 119  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||  |||||||| ||||| ||||||||| |||| |  ||    
T  10354032 cgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacctcagaaattcccccaatcaatccttaattcttcgattca 10353933  T
Q  120 aattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatcgagg------attccactcaaccatcctttcacggcgggtaacac 213  Q
    |||||||| |||||||| |  |||||||||| |||     ||||      | ||||| |       |||||| |||||| |||||||   | || ||||     
T  10353932 aattcgatatctaccaaattaaaatcgatgatgatttctctgatccagacacatcgatgttactttttccacacaaccaccctttca---ccggcaacag 10353836  T
Q  214 cagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaac 313  Q
    || ||||||||| |||||| ||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   |     
T  10353835 caccaacatcgatcctttcaagggtaacaacaccattactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttcacgcat 10353736  T
Q  314 ccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct---attct------tg 404  Q
    |||   | |||||| ||||||||| | |||||||| ||||||||||| ||| || ||||||||||||||||||||||||| |||   |||||      ||    
T  10353735 cctaacgcccccaacgaaatcacaatatggaaccccaacacccgtaagcatcggattatcccttttctccctcttcctatccctaacattctccaatctg 10353636  T
Q  405 accccacaatcaaagcctccttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccacca 504  Q
    ||  | | | |   | || |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||  |||| |  ||    
T  10353635 acaaccctaaccgtggctgcttatgcgttcatggcttcggttttgattctgtatccggcgattacaaactcctcagaatctctaacttgctcgatctaca 10353536  T
Q  505 aagcactttttatgatccaca 525  Q
    || | ||||||||||||||||    
T  10353535 aaaccctttttatgatccaca 10353515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 9292815 - 9292638
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgca 119  Q
    |||||||||||||||||| |||||||| |||||||||| ||||  ||||  |||||||||||| ||||||||||||| |||||||||||||||| || ||    
T  9292815 cgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttcacctcaaaaattccctcaaccgatccttaatccttcgacaca 9292716  T
Q  120 aattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatcgaggattccactcaaccatcctttca 200  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||| || ||||  ||||||||||||||||||||||    
T  9292715 aattcgatctctaccaactccaaatcgat---gatgatgatgatttctccaagtcgattattccactcaaccatcctttca 9292638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 9321878 - 9321697
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgca 119  Q
    ||||||| ||| |||||| |||||||| |||||||||| ||| | |||||||||||||| ||| |||||||||||| ||||||||||||| |||||| ||    
T  9321878 cgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacaca 9321779  T
Q  120 aattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatc---gaggattccactcaaccatcctttcac 201  Q
    |||||||||||||||||||||||||||||   ||| |||||||||||||||||||   || ||||||||||||||||||||||||    
T  9321778 aattcgatctctaccaactccaaatcgat---gatcatgatgatttctctaaatccatgatgattccactcaaccatcctttcac 9321697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 256 - 525
Target Start/End: Complemental strand, 10348454 - 10348185
Alignment:
Q  256 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 355  Q
    |||||||||||||||||||||||||||||||||||  ||   | ||| |||||   | |||    ||| ||| ||||||||| |||||||||||||||||    
T  10348454 tatcggttcatgtaacggcctcctcgccatctccacaggggtaatcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaaccctaacacc 10348355  T
Q  356 cgtaaacatagggttatcccttttctccctcttcctattcctattcttgac-cccacaatcaaagcctccttatgtgttcatggcttcggttttgattct 454  Q
    |||||||||    ||||||||||||||||||||||||||||||||||| ||  | || | ||||  ||||||||| ||||| |||||||||||||||       
T  10348354 cgtaaacatcacattatcccttttctccctcttcctattcctattcttaactacgacga-caaatgctccttatgcgttcacggcttcggttttgatcaa 10348256  T
Q  455 ttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 525  Q
     ||||||| |||||||||||||||||||| ||| ||||| |||| |  || | | ||||||||||||||||    
T  10348255 atatccggtgattacaaactcctcagaatttctcacttactcgatctacagaaccctttttatgatccaca 10348185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 8572763 - 8572879
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgca 119  Q
    ||||||| |||||||||| |||||||  |||||||||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||| ||| |||||    
T  8572763 cgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgca 8572862  T
Q  120 aattcgatctctaccaa 136  Q
    | | |||| ||||||||    
T  8572863 actacgatatctaccaa 8572879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 9060360 - 9060535
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaa---aattccctcaatcgatccttaatccttcaac 116  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||| ||||  |||||| ||||| ||   ||| ||||||||||||   ||||||||| ||    
T  9060360 cgatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgac 9060459  T
Q  117 gcaaattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatcgaggattccactcaaccatccttt 198  Q
     ||||| |||||||||||||||||||      | |||||||||||||||||||||||| | ||| || ||||||||||||||    
T  9060460 acaaatccgatctctaccaactccaa------gtcgatgatgatgatttctctaaatcaatgataccgctcaaccatccttt 9060535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 260 - 396
Target Start/End: Complemental strand, 10336503 - 10336367
Alignment:
Q  260 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 359  Q
    |||||||| || |||||||||||||||||||| ||| || ||||||||| ||||||||    | ||||||||||| ||||||| || |||| || |||||    
T  10336503 ggttcatgcaatggcctcctcgccatctccaatggcgaaatcgctttcactaacccttactccgccaatgaaatcgcattctgtaatcctaccatccgta 10336404  T
Q  360 aacatagggttatcccttttctccctcttcctattcc 396  Q
    ||||| || ||||||||| ||||||||||||||||||    
T  10336403 aacatcggattatcccttatctccctcttcctattcc 10336367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 9316912 - 9316793
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaa---aattccctcaatcgatccttaatccttcaac 116  Q
    ||||||| |||||||||| ||||||| ||||| ||||| ||||| |||||||||||||||||| ||   |||||||||||||||||||||||||||||      
T  9316912 cgatcaacttcaaaatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcatt 9316813  T
Q  117 gcaaattcgatctctaccaa 136  Q
     ||||| ||| |||||||||    
T  9316812 acaaatccgaactctaccaa 9316793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 10336698 - 10336621
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaat 97  Q
    |||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  10336698 cgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttcaccttcaaaattccctcaat 10336621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 7114907 - 7114984
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaat 97  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||  |||||||| |||||    
T  7114907 cgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaattccttcaat 7114984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 258 - 398
Target Start/End: Complemental strand, 9316698 - 9316558
Alignment:
Q  258 tcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccg 357  Q
    ||||||||||||||||||| |||||||| ||||| ||  || ||||||||||  | ||||  | | |||| ||||||||| |||||||||||||||||||    
T  9316698 tcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaaccctaacacccg 9316599  T
Q  358 taaacatagggttatcccttttctccctcttcctattccta 398  Q
    ||||||| |  |||||||||| || |||||| |||| ||||    
T  9316598 taaacatcgtattatccctttccttcctcttgctatcccta 9316558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 245 - 488
Target Start/End: Complemental strand, 9321659 - 9321407
Alignment:
Q  245 accatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgga 344  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||| ||||| || | ||||||| | | |||    ||||||| ||||||||| ||||||    
T  9321659 accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga 9321560  T
Q  345 accctaacacccgtaaacatagggttatcccttttctccctcttcctattcct---attcttgacccc-acaa--tcaaa-gc--ctccttatgtgttca 435  Q
    |||||| ||| ||||| ||| |  | |||||||| || ||||||||||| |||   ||| | ||  || ||||  ||||  ||  || |||||| |||||    
T  9321559 accctagcactcgtaagcatcgtatgatccctttcctacctcttcctatccctgacattatggaatccgacaacatcaatcgctgctgcttatgcgttca 9321460  T
Q  436 tggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 488  Q
    ||| |||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9321459 tggtttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9321407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 14551206 - 14551091
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgca 119  Q
    ||||||| |||||||||| || ||||| |||||||||||||||| |||||||| ||||||||  |||||||||||||| | ||||||||||||| || ||    
T  14551206 cgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatccttcgacaca 14551108  T
Q  120 aattcgatctctaccaa 136  Q
    | | | |||||||||||    
T  14551107 agtccaatctctaccaa 14551091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 394
Target Start/End: Original strand, 8572958 - 8573101
Alignment:
Q  251 actcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaacccta 350  Q
    |||| |||||||||||||||||||||||||||||| || || ||   | ||||||| | | | |||  |||| ||||  ||||| || ||||||||||||    
T  8572958 actcttatcggttcatgtaacggcctcctcgccatttctaatggtttaatcgctttgactcaacctaatgacgccaaccaaatcgcaatctggaacccta 8573057  T
Q  351 acacccgtaaacatagggttatcccttttctccctcttcctatt 394  Q
    ||||||||||||||    ||||||||||||||||||||||||||    
T  8573058 acacccgtaaacatcacattatcccttttctccctcttcctatt 8573101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 398
Target Start/End: Original strand, 9283603 - 9283790
Alignment:
Q  211 caccagcaacatcgaccctttcgaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcatt 310  Q
    ||||| ||||||||| ||||||  | |||||| || || | ||| ||| |||||||||||||||||||||||||||| ||| |||  | | ||||| |      
T  9283603 caccaccaacatcgatcctttcacgcttaacagcatcaaggctcttattggttcatgtaacggcctcctcgccatctacaatggcccaattgcttttacg 9283702  T
Q  311 aacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 398  Q
     | ||    ||| | | |||||||||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||| ||||    
T  9283703 catccaaacgacgcaactgaaatcacaatctggaacactaacacccgtaaacattggattatcccttttctccctcttcctatcccta 9283790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 256 - 398
Target Start/End: Complemental strand, 9357852 - 9357710
Alignment:
Q  256 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 355  Q
    |||||||||||||||||||||||||||||||||||| ||| || |||||||||   | |||   | | |||| |||||| || ||||||||| ||||| |    
T  9357852 tatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaaccataacatc 9357753  T
Q  356 cgtaaacatagggttatcccttttctccctcttcctattccta 398  Q
    |||||||||    |||||||||| |||||||||||||| ||||    
T  9357752 cgtaaacatcacattatccctttcctccctcttcctatcccta 9357710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 9275123 - 9275051
Alignment:
Q  326 aatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 398  Q
    |||||||| ||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||    
T  9275123 aatgaaattacaatctggaaccctaacaccggtaaacatcggattatcccttttctccctcttcctataccta 9275051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 483
Target Start/End: Complemental strand, 9329271 - 9329035
Alignment:
Q  256 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 355  Q
    |||||||||||| ||||||||| | || |||||| | ||| || ||||||| |   |||||   | |||||| ||||||||| |||||||||||||||||    
T  9329271 tatcggttcatgcaacggcctcattgctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaaccctaacacc 9329172  T
Q  356 cgtaaacatagggttatcccttttctccctcttcctattccta---ttcttgacccc----acaatcaaagc--ctccttatgtgttcatggcttcggtt 446  Q
    ||||||||| |  |||||||||| || |||||| |||| ||||   |||||||  |     |||  ||  ||  ||||||||| ||||| || |||||||    
T  9329171 cgtaaacatcgtattatccctttcctacctcttgctatccctaacattcttgaatctgacaacatccatcgcttctccttatgcgttcacggtttcggtt 9329072  T
Q  447 ttgattctttatccggcgattacaaactcctcagaat 483  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9329071 ttgatcctttatccggtgattacaaactcctcagaat 9329035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 10348690 - 10348620
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattc 90  Q
    |||||||  ||||||||| ||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  10348690 cgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 9275410 - 9275333
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaat 97  Q
    |||||||| ||||||||| ||||||| || || ||||||||||| |||||||||||||| ||| ||||||||||||||    
T  9275410 cgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttcatctcaaaaattccctcaat 9275333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 364
Target Start/End: Original strand, 7115110 - 7115218
Alignment:
Q  256 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 355  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| |   | |||  | || | | |||||||||| |||||||| ||||||||    
T  7115110 tatcggttcatgtaacggcctcctcgccatctccaatggccaaatcgcttttacgtatcctaatcacgcaactgaaatcacaatctggaacactaacacc 7115209  T
Q  356 cgtaaacat 364  Q
    |||||||||    
T  7115210 cgtaaacat 7115218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 9358002 - 9357935
Alignment:
Q  21 gatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaat 88  Q
    |||||| |||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||| |||||    
T  9358002 gatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 9357676 - 9357614
Alignment:
Q  426 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 488  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||||    
T  9357676 tatgcgttcacggcttcggttttgatcctttaaccggcgattacaaactcctcagaatctctt 9357614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 397
Target Start/End: Original strand, 12005658 - 12005726
Alignment:
Q  329 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattcct 397  Q
    |||||||| |||||||||||||||| |||||||||| || ||||||||  ||||||| |||||||||||    
T  12005658 gaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctccctattcctattcct 12005726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 247 - 398
Target Start/End: Complemental strand, 9292609 - 9292458
Alignment:
Q  247 catgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaac 346  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||  || || ||   ||||   | ||||  | ||| || ||||||||| ||| ||||    
T  9292609 catgcctcttattggttcatgtaacggcctcctcgccatttccaatagccaaatctgcttcacgcatccttacgcccctaacgaaatcacagtcttgaac 9292510  T
Q  347 cctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 398  Q
    |||||||| | ||||||| || |||||||||||||||||||| |||| ||||    
T  9292509 cctaacactcataaacatcggattatcccttttctccctcttgctatcccta 9292458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 488
Target Start/End: Complemental strand, 10336338 - 10336275
Alignment:
Q  425 ttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 488  Q
    ||||| ||||| || |||||||||||||| ||||||| ||||||||||||||||||||| ||||    
T  10336338 ttatgcgttcacggattcggttttgattcattatccgccgattacaaactcctcagaatctctt 10336275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 9329483 - 9329418
Alignment:
Q  23 tcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaat 88  Q
    |||| |||||||||| |||||||| |||||||||||||||| ||||  |||||||||||| |||||    
T  9329483 tcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 9283436 - 9283512
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaa 96  Q
    ||||||| ||| |||||| ||  |||| |||| ||||| |||||||||||||||||||||||| ||| |||||||||    
T  9283436 cgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaagttccctcaa 9283512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 432 - 488
Target Start/End: Original strand, 9283833 - 9283889
Alignment:
Q  432 ttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 488  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||| |||| ||||    
T  9283833 ttcacggcttcggttttgatcctttaaccggcgattacaaactcctccgaatctctt 9283889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 7612783 - 7612716
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaa 87  Q
    ||||||||||| |||||  ||||||||||||| ||||||||||| ||||  |||||||||||| ||||    
T  7612783 cgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttcacctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 488
Target Start/End: Complemental strand, 9292421 - 9292359
Alignment:
Q  426 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 488  Q
    |||| ||||| |||||||||| |||| | ||| ||||||||||||||||||||||||| ||||    
T  9292421 tatgcgttcacggcttcggttatgatccattaaccggcgattacaaactcctcagaatctctt 9292359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 384
Target Start/End: Original strand, 8579032 - 8579088
Alignment:
Q  328 tgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccc 384  Q
    ||||||| | |||||||||||||||| |||||||||| | |||||||||| ||||||    
T  8579032 tgaaatcgctttctggaaccctaacatccgtaaacatcgagttatcccttatctccc 8579088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 11987021 - 11987068
Alignment:
Q  329 gaaatcacattctggaaccctaacacccgtaaacatagggttatccct 376  Q
    |||||| | ||||||||||||||||||||||||||| || ||||||||    
T  11987021 gaaatcgctttctggaaccctaacacccgtaaacatcggattatccct 11987068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 374
Target Start/End: Complemental strand, 16269499 - 16269456
Alignment:
Q  331 aatcacattctggaaccctaacacccgtaaacatagggttatcc 374  Q
    ||||||||||||||||||||||||| |||||||| || ||||||    
T  16269499 aatcacattctggaaccctaacacctgtaaacattggattatcc 16269456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 9060666 - 9060735
Alignment:
Q  329 gaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta 398  Q
    |||| |||| ||||||||||||||||||| ||| || ||   ||||||||| ||||||||||||| ||||    
T  9060666 gaaaccacaatctggaaccctaacacccgcaaagatcggaccatcccttttatccctcttcctatcccta 9060735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 483
Target Start/End: Original strand, 9060772 - 9060829
Alignment:
Q  426 tatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 483  Q
    |||| ||||| ||||||||||||||| | ||  ||| |||||||||||||||||||||    
T  9060772 tatgcgttcacggcttcggttttgatccattcaccgccgattacaaactcctcagaat 9060829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Complemental strand, 9275001 - 9274948
Alignment:
Q  430 tgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaat 483  Q
    |||||| || || ||||||||| |||||||||||||||| ||||| ||||||||    
T  9275001 tgttcacggttttggttttgatcctttatccggcgattataaacttctcagaat 9274948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 8577708 - 8577760
Alignment:
Q  43 atccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctca 95  Q
    ||||||||| ||||||||||| ||||||||| || ||||| |||| |||||||    
T  8577708 atccttaattgattcccacaacttcatcaacttttacctcaaaaactccctca 8577760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 26575766 - 26575648
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgca 119  Q
    ||||||| |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||| |  ||    
T  26575766 cgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacctcagaaattcccccaatcgatccttaatccttcgattca 26575667  T
Q  120 aattcgatctctaccaact 138  Q
    |||||||| ||||||||||    
T  26575666 aattcgatatctaccaact 26575648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 525
Target Start/End: Complemental strand, 26575563 - 26575267
Alignment:
Q  238 taacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcaca 337  Q
    |||||||||| | |||| |||||||||||||||||||||||||||||| ||| |||||  | | |||||||   | ||    | |||||| |||||| ||    
T  26575563 taacaacacccttactcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgca 26575464  T
Q  338 ttctggaaccctaacacccgtaaacatagggttatcccttttctccctcttcctattccta---ttct------tgaccccac-aatcaaagcctcctta 427  Q
     ||||||||||| ||||| ||||| || || |||||||||||||||||||||| || ||||   ||||      ||||  | | ||||   || | ||||    
T  26575463 atctggaacccttacaccggtaaatatcggattatcccttttctccctcttcccatccctaacattctccaatctgacaaccctaatcgtggc-tgctta 26575365  T
Q  428 tgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatcttacttaatcgaccaccaaagcactttttatgatccaca 525  Q
    || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||| |  |||| | ||||||||||||||||    
T  26575364 tgcgttcacggcttcggttttgattctttatccggcgattacaaactcctcagaatctcttacttgctcgatctacaaaaccctttttatgatccaca 26575267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 562038 - 561980
Alignment:
Q  39 ttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaat 97  Q
    |||||||| |||||||||||||||| ||||  |||||||||||| |||| |||||||||    
T  562038 ttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctcaat 561980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 20 - 385
Target Start/End: Complemental strand, 37463409 - 37463041
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgca 119  Q
    ||||||| |||||||||| ||||||| ||||||||||| ||||| |||||||||||||| ||| ||||| ||||||||| |||| ||||| ||| |  ||    
T  37463409 cgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttcatctcaaaaatcccctcaatcaatccgtaatcattcgaaaca 37463310  T
Q  120 aattcgatctctaccaactccaaatcgatgacgatgatgatgatttctct---------aaatcgaggattccactcaaccatcctttcacggcgggtaa 210  Q
    | | |||| ||||||||||||||||||      ||||| | |||||||||         || ||||  ||||||||||||||||||||||     |||||    
T  37463309 actccgatatctaccaactccaaatcg------atgataacgatttctctaatcgaatcaattcgattattccactcaaccatcctttca---aaggtaa 37463219  T
Q  211 caccagcaacatcgaccctttc---gaggttaacaacaccatgactcgtatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttc 307  Q
    || |  ||||||||| |||| |     |  | ||| ||||||| ||| ||||||||||||||||||||||||||| |||||||| ||| || ||||||||    
T  37463218 cagccccaacatcgatccttacacacggcgtgacagcaccatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttc 37463119  T
Q  308 attaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgtaaacatagggttatcccttttctccct 385  Q
    |   | |||   | | |||| ||||||||| |||||||||||||||| |||||||||  | |||||||||||||||||    
T  37463118 acgcatcctaacgccgccaacgaaatcacaatctggaaccctaacacacgtaaacatctgattatcccttttctccct 37463041  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 37462993 - 37462929
Alignment:
Q  424 cttatgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 488  Q
    |||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  37462993 cttatgcgttcacggcttcggttttgattctttaaccggcgattacaaactcctcagaatctctt 37462929  T

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Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 260 - 397
Target Start/End: Original strand, 41966185 - 41966322
Alignment:
Q  260 ggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacccgta 359  Q
    |||||||||||||||||||||  ||||||||| ||| || ||| ||||  ||||||||  |||   |||||||||||||||||||||||||||| | |||    
T  41966185 ggttcatgtaacggcctcctctgcatctccaatggcgaaatcgatttctctaacccttacgacaaaaatgaaatcacattctggaaccctaacatctgta 41966284  T
Q  360 aacatagggttatcccttttctccctcttcctattcct 397  Q
    ||||| || ||||||||||||||||| |||||||||||    
T  41966285 aacatcggattatcccttttctccctattcctattcct 41966322  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 43 - 113
Target Start/End: Original strand, 41966007 - 41966077
Alignment:
Q  43 atccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttc 113  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  41966007 atccttaatcgattcccacaacttcatcaaccttcacctcagaaaatccctcaatcgatccttaatccttc 41966077  T

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Target: scaffold0667 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 5346 - 5253
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttc 113  Q
    ||||||| |||||||||| |||||||| |||||||||| ||||| |||||||||||||||| | |||||||||||||| ||||||| |||||||    
T  5346 cgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttcaccgcaaaaattccctcaatagatccttcatccttc 5253  T

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Target: scaffold0667; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 481
Target Start/End: Complemental strand, 5149 - 4921
Alignment:
Q  256 tatcggttcatgtaacggcctcctcgccatctccaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctggaaccctaacacc 355  Q
    |||||||||||||||||||||||||||| | ||||||||| || ||||| |||   | |||   | | |||| ||||||||| ||||||||||||||| |    
T  5149 tatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaaccctaacatc 5050  T
Q  356 cgtaaacatagggttatcccttttctccctcttcctattccta----ttcttgaccccacaatcaaagcctccttatgtgttcatggcttcggttttgat 451  Q
    |||||||||    ||||||||||||||||||| |||||| ||     ||||  | || ||| | ||   ||||||||| ||||| |||||||||||||||    
T  5049 cgtaaacatcacattatcccttttctccctctacctattactcctcgttctccatccgaca-tgaactgctccttatgcgttcacggcttcggttttgat 4951  T
Q  452 tctttatccggcgattacaaactcctcaga 481  Q
     ||||| |||||||||||||| ||||||||    
T  4950 cctttaaccggcgattacaaaatcctcaga 4921  T

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Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 29452622 - 29452706
Alignment:
Q  29 tcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttc 113  Q
    ||||||||| || ||||| |||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  29452622 tcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccctcaatcgttccttaatccttc 29452706  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 29467096 - 29467203
Alignment:
Q  29 tcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgcaaattcgatc 128  Q
    ||||||||| || ||||| |||||||||||||||| |||||||| |||||||||| ||||||||||||||| | ||||||||||| || ||| | ||||     
T  29467096 tcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccctcaatcgtttcttaatccttcgacacaactccgatt 29467195  T
Q  129 tctaccaa 136  Q
    ||||||||    
T  29467196 tctaccaa 29467203  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 29442633 - 29442737
Alignment:
Q  32 aaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttcaacgcaaattcgatctct 131  Q
    |||||| || ||||| ||||||||||||| || |||||||| |||||||||||||||| ||||||||| ||||||||||||| || ||| || ||| |||    
T  29442633 aaatcacttcaatccctaatcgattcccataacttcatcaaacttcacctccaaaatttcctcaatcgttccttaatccttcgacacaactttgatttct 29442732  T
Q  132 accaa 136  Q
    |||||    
T  29442733 accaa 29442737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 29424092 - 29424008
Alignment:
Q  29 tcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctccaaaattccctcaatcgatccttaatccttc 113  Q
    ||||||||| || ||||  |||||||||||||||  |||||||| ||||||||||| |||||| ||||||| |||||||||||||    
T  29424092 tcaaaatcacttcaatctctaatcgattcccacagcttcatcaagcttcacctccataattccttcaatcgttccttaatccttc 29424008  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 488
Target Start/End: Original strand, 29452951 - 29453012
Alignment:
Q  427 atgtgttcatggcttcggttttgattctttatccggcgattacaaactcctcagaatatctt 488  Q
    ||||||||| ||||| ||||||||| | |||  || ||||||||||||||||||||| ||||    
T  29452951 atgtgttcacggctttggttttgatccgttaaacgtcgattacaaactcctcagaatctctt 29453012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 36225637 - 36225575
Alignment:
Q  20 cgatcaatttcaaaatcatttaaatccttaatcgattcccacaaattcatcaaccttcacctc 82  Q
    ||||||| |||||||||| ||||||| ||||||||||| ||||| ||||  || |||||||||    
T  36225637 cgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttcacctc 36225575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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