View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_high_6 (Length: 518)
Name: NF10488_high_6
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 8554714 - 8555215
Alignment:
| Q |
1 |
tttcattggctaatcaagtgagtttggttaaacctgtcattaaatattaagttgaaactataatgttgaagactttgatgtaggggactatttgtgatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
8554714 |
tttcattggctaatcaagtgagtttggttaaacctgtcattaaatattaagttgaaactataattttgcagactttgatgtaggggactatttgtgatgt |
8554813 |
T |
|
| Q |
101 |
gatgtgatatcttatgataatagttaagt----tgttttaggtactcaccattgcataatgtccggagaccatgggagcaacatccagataagtcaattc |
196 |
Q |
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| T |
8554814 |
gatgtgatatcttatgataatagttaagtaagttgttttaggtactcaccattgcataatgtctggagaccatgggagcaacatccagataagtcaattc |
8554913 |
T |
|
| Q |
197 |
agtatccaccaacaatgctattgtattgatagctgatcatgatgatcgtgttgtgccattgcattcattgaagctgttagcggttagtatgctttccata |
296 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554914 |
agtatccaccaacaatgctatt-----gatagctgatcatgatgatcgtgttgtgccattgcattcattgaagctgttagcggttagtatgctttccata |
8555008 |
T |
|
| Q |
297 |
atttatgaatttattttggaagctgcaaacttttaacttgtattccaaatccaaatattgagcagaccagaccatgcagtatgtccttgttactggccta |
396 |
Q |
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| T |
8555009 |
atttatgaatttattttggaagctgcaaacttttaacttgtattccaaatccaaatattgagcagaccagaccatgcagtatgtccttgttactagccta |
8555108 |
T |
|
| Q |
397 |
gataaaagtccgcagacaaacccaataattgctcgaattgaatgcaaagctggacatggagctgggcgtccgacacagataattgtaatatactactaat |
496 |
Q |
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| T |
8555109 |
gataaaagtccgcagacgaacccaataattgctcgaattgaatgcaaagctggacatggagctgggcgtccgacacagaaaattgtaatatactactaat |
8555208 |
T |
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| Q |
497 |
ttgtttt |
503 |
Q |
| |
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||||||| |
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| T |
8555209 |
ttgtttt |
8555215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 109 - 299
Target Start/End: Original strand, 8559349 - 8559533
Alignment:
| Q |
109 |
atcttatgataatagttaagttgttttaggtactcaccattgcataatgtccggagaccatgggagcaacatccagataagtcaattcagtatccaccaa |
208 |
Q |
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|||||||||||||| | | | ||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||| ||| |
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| T |
8559349 |
atcttatgataatact-atggtgtttcaggtactcaccattgcataatgtccggagaccatgggaacagcatccagataagtcgattcagtacccatcaa |
8559447 |
T |
|
| Q |
209 |
caatgctattgtattgatagctgatcatgatgatcgtgttgtgccattgcattcattgaagctgttagcggttagtatgctttccataatt |
299 |
Q |
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| T |
8559448 |
caatgctattg-----acagctgatcatgatgatcgtgttgtgccattacattcattgaagctattggcggtttgtctgcttcccataatt |
8559533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 364 - 487
Target Start/End: Original strand, 8559616 - 8559739
Alignment:
| Q |
364 |
cagaccatgcagtatgtccttgttactggcctagataaaagtccgcagacaaacccaataattgctcgaattgaatgcaaagctggacatggagctgggc |
463 |
Q |
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|||||| |||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8559616 |
cagaccttgcagtatgtccttgttactagcctggataaaagtccccagacgaacccaataattgctcgaattgaatgcaaggctggacatggagctgggc |
8559715 |
T |
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| Q |
464 |
gtccgacacagataattgtaatat |
487 |
Q |
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|||||||||||| || |||||||| |
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| T |
8559716 |
gtccgacacagaaaactgtaatat |
8559739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8559205 - 8559263
Alignment:
| Q |
1 |
tttcattggctaatcaagtgagtttggttaaacctgtcattaaatattaagttgaaact |
59 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| || ||||||| |||| ||||||| |
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| T |
8559205 |
tttcattggctaatcaagtgagtttcgttaaacctatcgttaaatagtaagatgaaact |
8559263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 284
Target Start/End: Original strand, 53740281 - 53740427
Alignment:
| Q |
133 |
tttaggtactcaccattgcataatgtccggagaccatgggagcaacatccagataagtcaattcagtatccaccaacaatgctattgtattgatagctga |
232 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||| || ||||| || ||||||||||| || ||| |||| ||| ||| || | || || |
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| T |
53740281 |
tttaggtactcaccattgcataatgtccggcgaccttgggaacagcatcctgacaagtcaattcaatacccatcaactatg---ttg--ttaacggcaga |
53740375 |
T |
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| Q |
233 |
tcatgatgatcgtgttgtgccattgcattcattgaagctgttagcggttagt |
284 |
Q |
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|||||||||||| ||||||||| | || ||||||||||| || ||||||||| |
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| T |
53740376 |
tcatgatgatcgagttgtgccactacactcattgaagctattggcggttagt |
53740427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 484
Target Start/End: Original strand, 53740703 - 53740787
Alignment:
| Q |
400 |
aaaagtccgcagacaaacccaataattgctcgaattgaatgcaaagctggacatggagctgggcgtccgacacagataattgtaa |
484 |
Q |
| |
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|||||||| || |||||||| ||||||| ||| ||||| |||||||||||||||||||| || ||||| ||| ||| ||| |||| |
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| T |
53740703 |
aaaagtccccaaacaaaccctataattggtcgcattgactgcaaagctggacatggagcgggtcgtccaacaaagaaaatggtaa |
53740787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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