View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_high_7 (Length: 456)
Name: NF10488_high_7
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 3034006 - 3033577
Alignment:
| Q |
1 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgacggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3034006 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgacggat |
3033907 |
T |
|
| Q |
101 |
tgaagaatcagcgagtataggagaaaggaaaggagtagagaggaagccatgtttagattttgtaatcaattcgatccatatagnnnnnnnnn--atagta |
198 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3033906 |
tgaagaatcagcgagtataggagaaaggaaaggagtagagaggaagccatgtttagattttgtaatcaattcgatccatatagtttttttttttatagta |
3033807 |
T |
|
| Q |
199 |
ttatagctattgtctgtttccataaaaattccagcacttattcattagtctttctatcatttgaataatatttttgtagacttggaccttgatcaagttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033806 |
ttatagctattgtctgtttccataaaaattccagcacttattcattagtctttctatcgtttgaataatatttttgtagacttggaccttgatcaagttt |
3033707 |
T |
|
| Q |
299 |
tatgccacattatagttttcttccaacacgacttcttttaggttaaaaccctaaattttttgccacataacctcactgagctacacaacaaagataaatt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3033706 |
tatgccacattatagttttcttccaacacgacttcttttaggttaaaaccctaaattttttgccacatcacctcactgagctacacaacaaagataaatt |
3033607 |
T |
|
| Q |
399 |
gaagaatcagtgatattagaggagaaaggaaa |
430 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
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| T |
3033606 |
gaagaatcagtg--attagaggagaaaggaaa |
3033577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 193 - 430
Target Start/End: Original strand, 25125464 - 25125699
Alignment:
| Q |
193 |
atagtattatagctattgtctgtttccataaaaattccagcacttattcattagtctttctatcatttgaataatatttttgtagacttggaccttgatc |
292 |
Q |
| |
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|||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25125464 |
atagtattgtagctattgtttgtttccataaattttcaagcacttattcattagtctttctatcatttgaataatctttttgtagacttggaccttgatc |
25125563 |
T |
|
| Q |
293 |
aagttttatgccacattatagttttcttccaacacgacttcttttaggttaaaaccctaaattttttgccacataacctcactgagctacacaacaaaga |
392 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25125564 |
aagttttatgccacagtatagtttttttccaacacgacttcttttaggttaaaaccctaaattttttgccacatcacctcactgagctacacaacaaaga |
25125663 |
T |
|
| Q |
393 |
taaattgaagaatcagtgatattagaggagaaaggaaa |
430 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| |
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|
| T |
25125664 |
taaattgaagaatcagtg--attagaggagaaaggaaa |
25125699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 193 - 430
Target Start/End: Complemental strand, 3041447 - 3041208
Alignment:
| Q |
193 |
atagtattatagctattgtctgtttccataaaaattccagcacttattcattagtctttctatcatttgaataatatttttgtagacttggacc----tt |
288 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |
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|
| T |
3041447 |
atagtattgtagctattgtttgtttccataaattttccagcacttattcattagtcttgctatcatttgaataatctttttgtagacttggaccaacctg |
3041348 |
T |
|
| Q |
289 |
gatcaagttttatgccacattatagttttcttccaacacgacttcttttaggttaaaaccctaaattttttgccacataacctcactgagctacacaaca |
388 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3041347 |
gatcaagtttgatgccacagtatagtttttttccaacacgacttcttttaggttaaaaccctaaattttttgccacatcacctcactgagctacacaaca |
3041248 |
T |
|
| Q |
389 |
aagataaattgaagaatcagtgatattagaggagaaaggaaa |
430 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3041247 |
aagataaattgaagaatcagtg--attagaggagaaaggaaa |
3041208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 3042046 - 3041863
Alignment:
| Q |
1 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgacggat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3042046 |
accagaaggtgaaagtaaccatgtagagttgctggtgtcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgatggat |
3041947 |
T |
|
| Q |
101 |
tgaagaatcagcgagtataggag-aaaggaaaggagtagagaggaagccatgtttagattttgtaatcaattcgatccatatag |
183 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
3041946 |
tgaagaatcagcgagtataggagaaaaggaaaggagtagagaggaagcgatgtttagattttgtaatcaatttcatccatatag |
3041863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 3054868 - 3054710
Alignment:
| Q |
1 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgacggat |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| || |||| |
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|
| T |
3054868 |
accagaaggggaaagcaaccatgtagagttgcttgtttcagcagtaaaagaatcaccaatggctatagtgtttttggtttgagctagaacatggatggat |
3054769 |
T |
|
| Q |
101 |
tgaagaatcagcgagtataggagaaaggaaaggagtagagaggaagccatgtttagatt |
159 |
Q |
| |
|
||||||||||| || | || ||||||| ||| ||||||| |||||||||||||||||| |
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|
| T |
3054768 |
tgaagaatcagtgacaagagaagaaagggaagcagtagagtggaagccatgtttagatt |
3054710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 3064432 - 3064563
Alignment:
| Q |
1 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgacggat |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||| | ||||||| ||||||||||||||||||||| |||| ||||| ||||||||||||||||||| || |||| |
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| T |
3064432 |
accagaaggtgaaagcaaccatggagaggtactggtttgtgcagtaaaagaatcaccaatgactatggtacttttggtttgagctacaacacagatggat |
3064531 |
T |
|
| Q |
101 |
tgaagaatcagcgagtataggagaaaggaaag |
132 |
Q |
| |
|
|| |||||||| ||| | |||| ||||||||| |
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|
| T |
3064532 |
tgcagaatcagtgagcagaggacaaaggaaag |
3064563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 3066469 - 3066555
Alignment:
| Q |
1 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctac |
87 |
Q |
| |
|
|||||||||||||| ||||||| |||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
3066469 |
accagaaggtgaaaacaaccatgaagaggtgttggtttgtgcagtaaaagaatcaccaatggctatagtacttttggtttgagctac |
3066555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 3072127 - 3072237
Alignment:
| Q |
1 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatggctatagtactattggtttgagctacaacaccgacggat |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||| || ||||||| | | || | |||||||| ||||| ||||| ||||||||||||||||||| || |||| |
|
|
| T |
3072127 |
accagaaggtgaaagcaaccatggagaggtgttggtttctgaaatatgaaaatcaccagctgctatggtacttttggtttgagctacaacactgatggat |
3072226 |
T |
|
| Q |
101 |
tgaagaatcag |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
3072227 |
tgaagaatcag |
3072237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 3047179 - 3047125
Alignment:
| Q |
382 |
cacaacaaagataaattgaagaatcagtgatattagaggagaaaggaaagtaaagag |
438 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
3047179 |
cacaacaaagataaattgaagaatcagtg--attagaggagaaaggaaagtagagag |
3047125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 3068456 - 3068516
Alignment:
| Q |
1 |
accagaaggtgaaagtaaccatgtagagttgctggtttcagcagtaaaagaatcaccaatg |
61 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||| || ||||||||||||||||||||| |
|
|
| T |
3068456 |
accagaaggtgaaagcaaccatggagagttgccggtatctgcagtaaaagaatcaccaatg |
3068516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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