View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_1 (Length: 676)
Name: NF10488_low_1
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 641; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 6 - 662
Target Start/End: Complemental strand, 34240234 - 34239578
Alignment:
| Q |
6 |
aggagaagcaaaggcaatggccatggcatcagtaaatagcatcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaaca |
105 |
Q |
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|||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240234 |
aggaaaagctaaggcaatggccatggcatcagcaaatagcatcatctccatttcatctgcttcattgttgaatcgaactcatcaaccaaaaacaacaaca |
34240135 |
T |
|
| Q |
106 |
cttattagcctccttaaacacaacaagaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240134 |
cttattagcctccttaaacacaacaagaaggagcatgaacaacacagtacttcaccatcctctttcactgtcaaagctcttaagatatcaacttcaacaa |
34240035 |
T |
|
| Q |
206 |
ccagaagacgtaggttgagttgctcagcctcggcttcagcatcttccacgcttccctcagctcttctttttgactgtgatggagtccttgtagatactga |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34240034 |
ccagaagacgtaggttgagttgctcagcctcggcttcagcatcttccacgcttccctcagctcttctttttgactgtgatggagtccttgtagatactga |
34239935 |
T |
|
| Q |
306 |
aaaagatggtcaccgcatttctttcaatgatactttccaagaggtgcctcctgctttttaatctttcttttttcacaagtaaatattacttcttattatg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239934 |
aaaagatggtcaccgcatttctttcaatgatactttccaagaggtgcctcctgctttttaatctttcttttttcacaagtaaatattacttcttattatg |
34239835 |
T |
|
| Q |
406 |
gttataactattcttaatagaagtcattgataagataaaagtatagaacaactagcgtgtacaataagacttatatagccgattagaacaactaacttgt |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239834 |
gttataactattcttaatagaagtcattgataagataaaagtatagaacaactagcgtgtacaataagacttatatagccgattagaacaactaacttgt |
34239735 |
T |
|
| Q |
506 |
gtaactaacttttacatctaaccttagtaatcaggtttgaatcctagaactagaatgccttcatcctacctcagccacctacgccttggaactagtatgc |
605 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239734 |
gtaactaacttttacatctaaccttagtaatcaggtttgaatcctagaactagaatgtcttcatcctacctcagccacctacgccttggaactagtatgc |
34239635 |
T |
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| Q |
606 |
aatcgaaagtagtacactaactgagatgctttagcaataacacttgaatgtgttgtt |
662 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34239634 |
aatcgaaagtagtacactaactgagatgctttagcaataacacttgaatgtgttgtt |
34239578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 468 - 526
Target Start/End: Complemental strand, 35094025 - 35093967
Alignment:
| Q |
468 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatctaa |
526 |
Q |
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|||||||||||||||| | || ||| ||||||||| ||||||||||||||||||||||| |
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| T |
35094025 |
aataagacttatataggcaatgagagcaactaactagtgtaactaacttttacatctaa |
35093967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 412 - 448
Target Start/End: Complemental strand, 484020 - 483984
Alignment:
| Q |
412 |
actattcttaatagaagtcattgataagataaaagta |
448 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
484020 |
actattcttaatagaagtcattgataagagaaaagta |
483984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 525
Target Start/End: Complemental strand, 40620 - 40563
Alignment:
| Q |
468 |
aataagacttatatagccgattagaacaactaacttgtgtaactaacttttacatcta |
525 |
Q |
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|||||| ||||||||| | |||||| |||||||| |||||||| ||||||||||||| |
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| T |
40620 |
aataaggcttatatagtcaattagattaactaactagtgtaacttacttttacatcta |
40563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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