View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_10 (Length: 429)
Name: NF10488_low_10
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 27 - 411
Target Start/End: Original strand, 35636902 - 35637291
Alignment:
| Q |
27 |
gaagcttcgacgccaccatggccgtcgtaaattccaagaaagagtgcattgttagagacaacttcaacttggctatgatcttccatagcttcatttgctt |
126 |
Q |
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|||||||||| |||| ||||||||||||||| ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35636902 |
gaagcttcgaagccagcatggccgtcgtaaactccaagaaagagtgcttttctagaggcaacttcaacttggctatgatcttccatagcttcatttgctt |
35637001 |
T |
|
| Q |
127 |
gaacaaaagcactggaaaattgtccatagcaatgccttttgagatcaattgaacttgcatgagggtcttggtcgaataaagccatgt------tgtcatt |
220 |
Q |
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| T |
35637002 |
gaacaaaagcactggaaaattgtccatagcaatgccttttgagatcaatcgaacttgcatgagggtcttggtcgaataaagccatgttgatgttgtcatt |
35637101 |
T |
|
| Q |
221 |
cttcctgttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtgagaaaagagagtgattttgattgtaagtga |
320 |
Q |
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| T |
35637102 |
cttccttttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtgagaaaagagagtgattttgattgtaagtga |
35637201 |
T |
|
| Q |
321 |
aagagtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaatattctatatggtatttatatatgtgaaatgaagggtaaaata |
411 |
Q |
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| T |
35637202 |
aagagtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaatattc-ctatgatatttatatatgtgaaatgaagggtaaaata |
35637291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 369
Target Start/End: Original strand, 35630439 - 35630804
Alignment:
| Q |
15 |
gagatgaactgtgaagcttcgacgccaccatggccgtcgtaaattccaagaaagagtgcattgttagagacaacttcaacttggctatgatcttccatag |
114 |
Q |
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| T |
35630439 |
gagatgaactgggaagcctcgaagccaccatggccgtcgtaaactccaagaaagagtgcatttctagaggcaacttcaacttggcttcgatcttccatat |
35630538 |
T |
|
| Q |
115 |
cttcatttgcttgaacaaaagcactggaaaattgtccatagcaatgccttttgagatcaattgaacttgcatgag-ggtc--ttggtcgaataaagccat |
211 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||| ||| |||||||| ||| || | || |||||||||||| | |
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| T |
35630539 |
cttcatttgcttgaacaaacgcactggaaaattctccatagcaatggtttttgagattaatcgaacttgcgagagagggccattcgtcgaataaagctaa |
35630638 |
T |
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| Q |
212 |
gttgtcattcttcctgttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatg--------tgagaaaagagagtg |
303 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| ||||||||| |||| |||||||||| |
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| T |
35630639 |
gttgtcattcttcctgttcctgcatagattaactatattttcaagccaaggatgcattttggaaggaaaaggaaatgtgattgtttgagcaaagagagtg |
35630738 |
T |
|
| Q |
304 |
attttgattgtaagtgaaagagtaatgatttgaagtatggaaaatagtgaatgtgaatgaatgaat |
369 |
Q |
| |
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| T |
35630739 |
attttgattgtgagtgagagagtaatgatttgaagtatggaaaattgtgaatgtgattgaatgaat |
35630804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 35633266 - 35633308
Alignment:
| Q |
249 |
ttttcaagccaaggatgcatctttgaaggagaaggaaatgtga |
291 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
35633266 |
ttttcaagccaaggatgcatttttgaaggaaaaggaaatgtga |
35633308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 10318713 - 10318438
Alignment:
| Q |
16 |
agatgaactgtgaagcttcgacgccaccatggccgtcgtaaattccaagaaagagtgcattgttagagacaacttcaacttggctatgatcttccatagc |
115 |
Q |
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|||||||| | ||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||| |
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| T |
10318713 |
agatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagactgcattgttagaggcaacttcaatttggctttgatcttccatagt |
10318614 |
T |
|
| Q |
116 |
ttcatttgcttgaacaaaagcactggaaaattgtccatagcaatgccttttgagatcaattgaacttgcatgagggtcttggtcgaataaagccatgttg |
215 |
Q |
| |
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||| |||||||||| |||||||||||||| |||||||||||| |||| ||||| ||| || || | ||||||||| |||||||||||| | |||| |
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| T |
10318613 |
agtattggcttgaacaacagcactggaaaattctccatagcaatggctttggagattaatcgatctcccgagagggtcttcgtcgaataaagcaaagttg |
10318514 |
T |
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| Q |
216 |
tcattcttcctgttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtga |
291 |
Q |
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| T |
10318513 |
tcattcctcatgttcctgtatagattaactatattttcaagccaagaatgcatctttgaaggaaaagaaaatgtga |
10318438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 10335957 - 10335682
Alignment:
| Q |
16 |
agatgaactgtgaagcttcgacgccaccatggccgtcgtaaattccaagaaagagtgcattgttagagacaacttcaacttggctatgatcttccatagc |
115 |
Q |
| |
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|||||||| | ||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||| |
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| T |
10335957 |
agatgaaccgggaagcttgggtgccaccatggccatcgtaaattccaagaaagagtgcattgttagaggcaacttcaatttggctttgatcttccatagt |
10335858 |
T |
|
| Q |
116 |
ttcatttgcttgaacaaaagcactggaaaattgtccatagcaatgccttttgagatcaattgaacttgcatgagggtcttggtcgaataaagccatgttg |
215 |
Q |
| |
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||| |||||||||| |||||||||||||| |||||||||||| |||| |||| ||| || || | ||||||||| |||||||||||| | |||| |
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| T |
10335857 |
agtattggcttgaacaacagcactggaaaattctccatagcaatggctttgtagattaatcgatctcccgagagggtcttcgtcgaataaagcaaagttg |
10335758 |
T |
|
| Q |
216 |
tcattcttcctgttcctgcatagattgactatattttcaagccaaggatgcatctttgaaggagaaggaaatgtga |
291 |
Q |
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|||||| || |||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||| |||||||| |
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| T |
10335757 |
tcattcctcatgttcctgtatagattaactatattttcaagccaagaatgcatctttgaaggaaaagaaaatgtga |
10335682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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