View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_11 (Length: 411)
Name: NF10488_low_11
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 184134 - 183751
Alignment:
| Q |
19 |
atagcatatttgcagaactctggtaggttatgtaaagcatgagtagaaaacacaatcttggttttttcacatgatggagagtacttaatataaacccaaa |
118 |
Q |
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| T |
184134 |
atagcatatttgcagaactctggtaggttatgtaaagcatgagtagaaaacacaatcttggttttttcacatgatggagagtacttaatataaacccaaa |
184035 |
T |
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| Q |
119 |
gccaaatcacattcaaccaataagaaattccgatagctaaagcagctccaatgtgtcctaatcccaacttaaaaaccagaatccaacaaataggaatgtg |
218 |
Q |
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| T |
184034 |
gccaaatcacattcaaccaataagaaattccgatagctaaagcagctccaatgtgtcctaatcccaacttaaaaaccagaatccaacaaataggaatgtg |
183935 |
T |
|
| Q |
219 |
caaaaatagagcagatactgagctaaaaaccattggaaagatcattccctgagtttggaaatagcgaatcaacgcttgaagaagtgcatagccaaataga |
318 |
Q |
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| T |
183934 |
caaaaatagagcagatactgagctaaaaaccattggaaagatcattccctgagtctggaaatagcgaatcaacgcttgaagaagtgcatagccaaataga |
183835 |
T |
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| Q |
319 |
gcgggaatgaggtatatgcagtactcgcgagctacatgagacattccagggtcttgactaaaaaacattagtattttatctgtg |
402 |
Q |
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| T |
183834 |
gcgggaatgaggtatatgcagtactcgcgagctacatgagacattccagggtcttgactaaaaaacattagtattttatctgtg |
183751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 142 - 303
Target Start/End: Complemental strand, 36214522 - 36214356
Alignment:
| Q |
142 |
gaaattccgatagctaaagcagctccaatgtgtcctaatcccaacttaaaaaccagaatccaacaaataggaatgtgcaaaaatagagcagatactgagc |
241 |
Q |
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| T |
36214522 |
gaaattccaatagctaaagcagctccaatgtgtcctaatcccaacttaaaaaccagaatccaacaaatatgaatttgcaaaaatagagcagatactgagc |
36214423 |
T |
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| Q |
242 |
taaaaaccattggaaagatc----attccctg-agtttggaaatagcgaatcaacgcttgaagaagt |
303 |
Q |
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| T |
36214422 |
taaaaacaatgggaaagatcgatcattccttggagtctgaaaatagcgaattaacacttgaagaagt |
36214356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 36214650 - 36214571
Alignment:
| Q |
19 |
atagcatatttgcagaactctggtaggttatgtaaagcatgagtagaaaacacaatcttggttttttcacatgatggaga |
98 |
Q |
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| T |
36214650 |
atagcatatttgcagaactccggtgggttatgtaaagcttgagtagaaaacacaatcttggttttttgacatgatggaga |
36214571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 31752670 - 31752819
Alignment:
| Q |
63 |
agaaaacacaatcttggttttttcacatgatggagagtacttaatataaacccaaagccaaatcacattcaaccaataagaaattccgatagctaaagca |
162 |
Q |
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||||||||||||||||||||| ||||| | |||||| ||||| ||||||| | |||||||||||||||||||||||||| ||| ||||| || || || |
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| T |
31752670 |
agaaaacacaatcttggttttctcacaagctggagaatacttcatataaattccaagccaaatcacattcaaccaataagcaataccgatggcaaatgct |
31752769 |
T |
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| Q |
163 |
gctccaatgtgtcctaatcccaacttaaaaaccagaatccaacaaatagg |
212 |
Q |
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||||||| ||||||||||| || ||||| |||| | |||||||||||| |
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| T |
31752770 |
gctccaacatgtcctaatccgaatttaaataccaaacaccaacaaatagg |
31752819 |
T |
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