View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_12 (Length: 404)
Name: NF10488_low_12
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 5500074 - 5500199
Alignment:
| Q |
43 |
tatgtgttgattatatgtcagtgttttattcttccatgtttgataataaatacacataccctgtcaaaaaataaaataatatacatgcaaaagttacatt |
142 |
Q |
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| T |
5500074 |
tatgtgttgattatatgtcagtgttttattcttccatgtttgataataaatacacataccctgtcaaaaaataaaataatatacatgcaaaagttacatt |
5500173 |
T |
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| Q |
143 |
ttta-tttattattaaagctccctaa |
167 |
Q |
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| T |
5500174 |
tttattttattattaaagctccctaa |
5500199 |
T |
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Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 308 - 394
Target Start/End: Original strand, 5500321 - 5500407
Alignment:
| Q |
308 |
tatagaacatagggatgtttaaatgtatttttacatttctatatatgatttgtttactgatattcttataagtatttactacctatg |
394 |
Q |
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| T |
5500321 |
tatagaacatagggatgtttaaatgtatttttccatttctatatatgatttgtttactgatattcttataactatttactacctatg |
5500407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 5500240 - 5500296
Alignment:
| Q |
180 |
ttattaaagttactttttgaatagtttatccgaacatttaatgctagagttatattt |
236 |
Q |
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| T |
5500240 |
ttattaaagttactttttgaatagtttatccgaacatttaatgctagagttatattt |
5500296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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