View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_13 (Length: 401)
Name: NF10488_low_13
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 53036682 - 53037057
Alignment:
| Q |
18 |
gaaacataacacacgtttcaacaatttacttttaccgccccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53036682 |
gaaacataacacacgtttcaacaatttacttttaccgccccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgag |
53036781 |
T |
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| Q |
118 |
caaagtccttgtgccgttttatccactagccggtcgtttacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53036782 |
caaagtccttgtgccgttttatccactagccggtcgtttacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatc |
53036881 |
T |
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| Q |
218 |
gaagcagaatcgtcgttaaccttatccgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53036882 |
gaagcagaatcgtcgttaaccttatccgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaa |
53036981 |
T |
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| Q |
318 |
ttgaagacattccattggttattgttcagctcacaaatttcaaatgtggtggtgctagcattagtttgttcatctc |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53036982 |
ttgaagacattccattggttattgttcagctcacaaatttcaaatgtggtggtgctagcattagtttgttaatctc |
53037057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 393
Target Start/End: Complemental strand, 39996909 - 39996538
Alignment:
| Q |
22 |
cataacacacgtttcaacaatttacttttaccgccccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaa |
121 |
Q |
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|||| ||||||| ||||||| |||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||| |
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| T |
39996909 |
catagcacacgtgccaacaatatacttttaccagcccccaaaaaactggcttacctcccccactaaaatcgccaccactttgaaagagtcattaagcaaa |
39996810 |
T |
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| Q |
122 |
gtccttgtgccgttttatccactagccggtcgtttacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaag |
221 |
Q |
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||||||||||||||||||||||| |||||||||||||| | ||||| || |||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
39996809 |
gtccttgtgccgttttatccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatctcgaatgcaactcattgggtgttcaattcatcgaag |
39996710 |
T |
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| Q |
222 |
cagaatcgtcgttaaccttatccgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattga |
321 |
Q |
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|| |||| |||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| |||||| || |
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| T |
39996709 |
cacaatcctcgttaacattatccgaactaggtgacttttcaccttcttcggaatattaccgttaccttatcccacacattgattacacactcccaatgga |
39996610 |
T |
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| Q |
322 |
agacattccattggttattgttcagctcacaaatttcaaatgtggtggtgctagcattagtttgttcatctc |
393 |
Q |
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||| |||||| ||||||| |||| ||||||||||| || || |||| | ||| ||||||||||| ||||| |
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| T |
39996609 |
agatattccactggttatctttcaactcacaaattttaattgcggtgtagttagtattagtttgttaatctc |
39996538 |
T |
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