View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10488_low_16 (Length: 350)
Name: NF10488_low_16
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 2657379 - 2657244
Alignment:
| Q |
192 |
gtctttgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatggaaatttttatagttttatgatcttgtttacatac |
291 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2657379 |
gtctttgtttctcgtctcaatcctcc-aaccaataggatcaacgctcttgtttgcagatatcatggaaatttt-atagttttatgatcttgtttacatac |
2657282 |
T |
|
| Q |
292 |
ctaccaagttaaggacgttgtataaaaatacataaact |
329 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2657281 |
ctaccaagttaaggacgttttataaaaatacataaact |
2657244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 2657572 - 2657411
Alignment:
| Q |
6 |
gagcagaacctgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatacaaaggaagaacaagaaatgtttg |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
2657572 |
gagcagcaactgtgatgataagagataatgtcaaacctaatgatgctagttatcactctatta----------------------aacaggaaatgtttg |
2657495 |
T |
|
| Q |
106 |
ttatgattaagattacacaaaagtacgtggatgagttgaatgttgaacattataatcttgttacgaataaatatgatatcaaatgtgt |
193 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2657494 |
ttatgattaagattacacaaaagt----ggatgagttgaatgttgaacattataatcttgttacgaataaatatgatatcaaatgtgt |
2657411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 13163468 - 13163550
Alignment:
| Q |
197 |
tgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatggaaatttttatagttttatgatct |
280 |
Q |
| |
|
|||||| |||||||||||| | ||| |||||||| | ||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
13163468 |
tgtttcccgtctcaatcctttgagccattaggatcatcactcttgtttgcagatatcatgtgaa-ttttaaagttttatgatct |
13163550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 16375422 - 16375587
Alignment:
| Q |
16 |
tgtgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatacaaaggaagaacaagaaatgtttgttatgattaa |
115 |
Q |
| |
|
||||||||||| || | |||||||||||||| | ||||||||||||||||||| |||||||||||||||| || |||||| || ||||||||||||| |
|
|
| T |
16375422 |
tgtgatgataaaaggtggtgtcaaacctaatgcttctagttatcactctattatcgatagactatacaaagggggatcaagaagtg-ttgttatgattaa |
16375520 |
T |
|
| Q |
116 |
gattacacaaaagtacgtggatgagttg---aatgttgaacattataatcttgttacgaataaatatgat |
182 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
16375521 |
gattacacaaaag---gtggatgagttgctacttgttgaacattataatcttattatgaataaatatgat |
16375587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 8332144 - 8332204
Alignment:
| Q |
197 |
tgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatgg |
257 |
Q |
| |
|
||||| |||||||||||||| |||||| || ||||||| |||||||||||||||||||||| |
|
|
| T |
8332144 |
tgtttttcgtctcaatcctctcaaccactaagatcaacactcttgtttgcagatatcatgg |
8332204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 3704846 - 3704786
Alignment:
| Q |
197 |
tgtttctcgtctcaatcctcccaaccaataggatcaacgctcttgtttgcagatatcatgg |
257 |
Q |
| |
|
||||||| ||||||||||| | ||||| ||||||||| |||||||||||| |||||||||| |
|
|
| T |
3704846 |
tgtttcttgtctcaatccttcgaaccactaggatcaatgctcttgtttgcggatatcatgg |
3704786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 47569363 - 47569427
Alignment:
| Q |
18 |
tgatgataagagataatgtcaaacctaatgatgctagttatcactctattattcatagactatac |
82 |
Q |
| |
|
||||||||| || || |||||||||||||| |||||||||||||||| ||||| |||||||||| |
|
|
| T |
47569363 |
tgatgataaaaggtagtgtcaaacctaatgctgctagttatcactctgttattggtagactatac |
47569427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University