View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_19 (Length: 280)
Name: NF10488_low_19
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_19 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 25812749 - 25812991
Alignment:
| Q |
15 |
aaaaggtccaacttgtcatgtactataaatattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaacttcatcatgagtca |
114 |
Q |
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| T |
25812749 |
aaaaggtccaacttgtcatgtactataaatattatagagtatagtatctaatatctatccaaaattgaagaatcaattcttctgacttcatcatgagtca |
25812848 |
T |
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| Q |
115 |
ttggcatattctttgttggtgaatatacaaatgtataaagaccttaaatcaaggtagggtttatttctagaaccaaatggacttaaagattagaagatac |
214 |
Q |
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| T |
25812849 |
ttggcatattctttgttggtgaatatacaaatgtataaagaccttaaatcaaggtagggtttatttctagaaccaaatggacttaaagattagaagatac |
25812948 |
T |
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| Q |
215 |
aaatacataactactaattttgaaatggatggaatttattccc |
257 |
Q |
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| T |
25812949 |
aaatacagaactactaattttgaattggatggaatttattccc |
25812991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 210
Target Start/End: Original strand, 25799931 - 25800122
Alignment:
| Q |
15 |
aaaaggtccaacttgtcatgtact---ataaatattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaacttcatcatgag |
111 |
Q |
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| T |
25799931 |
aaaaggaccaacttgtcatgtactactataaatatttaagagtatagtatctaatatctatccaaaaatgaagaatcagttcttcaaacttcatcatggg |
25800030 |
T |
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| Q |
112 |
tcattggcatattctttgttggtgaatatacaaatgtataaagaccttaaatcaaggtagggtttatttctagaaccaaatggacttaaagattagaag |
210 |
Q |
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| T |
25800031 |
tcattg------tcattgctggtgaagatacaaatgaat-tggaccttaaatcgaggtagaatttcttcaaagaatcaaatggacttcaagattagaag |
25800122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 114739 - 114548
Alignment:
| Q |
15 |
aaaaggtccaacttgtcatgtacta---taaatattatagagtatagtatctaatatctatccaaaaatgaagaatcaattcttctaacttcatcatgag |
111 |
Q |
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|||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |
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| T |
114739 |
aaaaggaccaacttgtcatgtactactataaatatttaagagtatagtatctaatatctatccaaaaatgaagaatcagttcttcaaacttcatcatggg |
114640 |
T |
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| Q |
112 |
tcattggcatattctttgttggtgaatatacaaatgtataaagaccttaaatcaaggtagggtttatttctagaaccaaatggacttaaagattagaag |
210 |
Q |
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| T |
114639 |
tcattg------tcattgctggtgaagatacaaatgaat-tggaccttaaatcgaggtagaatttcttcaaagaatcaaatggacttcaagattagaag |
114548 |
T |
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