View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_21 (Length: 279)
Name: NF10488_low_21
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_21 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 134 - 279
Target Start/End: Complemental strand, 36151739 - 36151594
Alignment:
| Q |
134 |
tcattgaatcgctccatcaatattgctcatccatccaccttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatc |
233 |
Q |
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| T |
36151739 |
tcattgaatcgctccatcaatattgctcatccatccaccttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatc |
36151640 |
T |
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| Q |
234 |
acagaccctgcatcagaaacataagcaggtaaatccttgccatcac |
279 |
Q |
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| T |
36151639 |
acagaccctgcagcagaaatatcagcaggtaaatccttgccatcac |
36151594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 36155089 - 36154980
Alignment:
| Q |
170 |
accttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcatcagaaacataagcaggtaaatcc |
269 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
36155089 |
accttatagaacagctccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatcc |
36154990 |
T |
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| Q |
270 |
ttgccatcac |
279 |
Q |
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|| ||||||| |
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| T |
36154989 |
ttaccatcac |
36154980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36151872 - 36151827
Alignment:
| Q |
1 |
aagaataaatagcagaaacatgttttttcaactttcaccctattct |
46 |
Q |
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| T |
36151872 |
aagaataaatagcagaaacatgttttttcaactttcaccctattct |
36151827 |
T |
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