View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_22 (Length: 268)
Name: NF10488_low_22
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 38107750 - 38107500
Alignment:
| Q |
1 |
aaactaaatgggggagagacacacccctccaatcatcagataaaacttgagacatccttggagaggatgttctaaataagtaattctcatgtcaccttca |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38107750 |
aaactaaacgggggagagacacacccctccaatcatcagataaaatttgagacatccttggaggggatgttctaaataagtaattctcatgtcaccttca |
38107651 |
T |
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| Q |
101 |
ctactcgtgttggcaagaacatccacacaccagttaacttctcgatacacatgtgtgatcctaacctcctagtttaatgtcatcaactctgaattatgaa |
200 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38107650 |
ctactcgtgttggcaagaacatccgcacaccggttaacttctcgatacacatgtgtgatcctaacctcctagtttaatgtcatcaactatgaattatgaa |
38107551 |
T |
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| Q |
201 |
ctcgttgatttctccactgccataacaattagaaagttgtcgcccgtagtg |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38107550 |
ctcgttgatttctccactgccataacaattagaaagttgtcgcccgtagtg |
38107500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 22007896 - 22007706
Alignment:
| Q |
1 |
aaactaaatgggggagagacacacccctccaatcatcagataaaacttgagacatccttggagagg-atgttctaaataagtaattctcatgtcaccttc |
99 |
Q |
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|||| ||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||| | || |||||||||||||||||||||||| |||| ||| |
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| T |
22007896 |
aaacaaaacgggggagagacacacccctacaatcatcagataaaacctgggacatccttggtgggggatgttctaaataagtaattctcatctcacattc |
22007797 |
T |
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| Q |
100 |
actactcgtgttggcaagaacatccacacaccagttaacttctcgatacacatgtgtgatcctaacctcctagtttaatgtcatcaactct |
190 |
Q |
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||||| | ||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||| ||||||||| |||||||||| |
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| T |
22007796 |
actacccatgttggcaagaacatatgcacacctgttagcttctcgatacacatgcgtgatcctaacctcccagtttaatgccatcaactct |
22007706 |
T |
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