View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_24 (Length: 267)
Name: NF10488_low_24
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 38107880 - 38108009
Alignment:
| Q |
1 |
catctgaatctatctaataaatgactatatttaacaaaatgatccaacatactgaacagatctaccgaagaaaagccgatccaaacattcataagcatct |
100 |
Q |
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| T |
38107880 |
catccgaatctatctaataaatgactatacttaacaaaatgatccaacatactgaacagatccaccgaagaaaagccgatccaaacattcataagcatct |
38107979 |
T |
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| Q |
101 |
atatctatattttatataaaaatatactca |
130 |
Q |
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| T |
38107980 |
atatctatattttatataaaaatatactca |
38108009 |
T |
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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 38108075 - 38108135
Alignment:
| Q |
196 |
caatcaaatcagaattttattggttactacatatttatcttcttctccttattttcatctc |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38108075 |
caatcaaatcagaattttattggttactacatatttatcttcttctccttattttcatctc |
38108135 |
T |
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