View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10488_low_26 (Length: 255)
Name: NF10488_low_26
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 46524717 - 46524465
Alignment:
| Q |
1 |
ctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtct |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46524717 |
ctggtattcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtct |
46524618 |
T |
|
| Q |
101 |
tcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46524617 |
tcagttagtagctacacaggttttcacatagtaggtgatcttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggg |
46524518 |
T |
|
| Q |
201 |
gtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagct |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46524517 |
gtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagct |
46524465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 46532270 - 46532018
Alignment:
| Q |
1 |
ctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtct |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| |||||||||| ||||| || |||||||| ||||| |||||||||||||||||||| ||||| ||| |
|
|
| T |
46532270 |
ctggtattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctccatct |
46532171 |
T |
|
| Q |
101 |
tcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggg |
200 |
Q |
| |
|
||| | || |||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
46532170 |
tcaataagcagctacactggttttcacattgtaggtgaccttgttgcacttatagatttgcttggtgttgaccaagtgtttcttgtggctcatgattggg |
46532071 |
T |
|
| Q |
201 |
gtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagct |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46532070 |
gtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagct |
46532018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 46322842 - 46323093
Alignment:
| Q |
1 |
ctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtct |
100 |
Q |
| |
|
|||||| || ||||||||||||| || |||||| |||| ||||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| ||| |
|
|
| T |
46322842 |
ctggtactcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctccatct |
46322941 |
T |
|
| Q |
101 |
tcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggg |
200 |
Q |
| |
|
||| | || |||||||||||||||||||| |||||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
46322942 |
tcaataagcagctacacaggttttcacattgtaggtgatctggttgcacttatagatttgcttggcgttgatcaagtgtttcttgtagctcatgattggg |
46323041 |
T |
|
| Q |
201 |
gtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc |
252 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
46323042 |
gtgccatcattggttggtacctttgcatgtttcgccctgaaagaatcaaagc |
46323093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 46326547 - 46326798
Alignment:
| Q |
1 |
ctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtct |
100 |
Q |
| |
|
|||||| || ||||||||||||| || |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
46326547 |
ctggtactcttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatgttccgtct |
46326646 |
T |
|
| Q |
101 |
tcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggg |
200 |
Q |
| |
|
|| |||| ||||||||| |||||||| |||| |||||| ||||| | || || || || || ||||| || ||||| || ||||||| ||||||| || |
|
|
| T |
46326647 |
tccattagcagctacacatgttttcacgtagttggtgacattgtttctctcatcgacttgcttggtgtggaacaagttttccttgttggtcatgatatgg |
46326746 |
T |
|
| Q |
201 |
gtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc |
252 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46326747 |
gtgccatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc |
46326798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 46490423 - 46490172
Alignment:
| Q |
1 |
ctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtct |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| | |
|
|
| T |
46490423 |
ctggtattcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctccggcc |
46490324 |
T |
|
| Q |
101 |
tcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggg |
200 |
Q |
| |
|
|| |||||||||||||| || || | || |||||| | ||||| || || || | || || ||||| | |||||||||||| ||||||||||||| |
|
|
| T |
46490323 |
tccattagtagctacacaatcttccatttggttggtgacatcgttgctctcatcgactcacttggcgttgaccgagtgtttcttgtagctcatgattggg |
46490224 |
T |
|
| Q |
201 |
gtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc |
252 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46490223 |
gtgccatcattggttggtatctttgtttgtttcgccctgaaagaatcaaagc |
46490172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 46520651 - 46520400
Alignment:
| Q |
1 |
ctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtct |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| || |
|
|
| T |
46520651 |
ctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgct |
46520552 |
T |
|
| Q |
101 |
tcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggg |
200 |
Q |
| |
|
||| | || ||||||||| || ||| | || ||||| | ||||| || || || | || || ||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
46520551 |
tcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgtagctcatgattggg |
46520452 |
T |
|
| Q |
201 |
gtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc |
252 |
Q |
| |
|
|||| || ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46520451 |
gtgccatgattggttggtatctttgcatgtttcgccctgaaagaatcaaagc |
46520400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 46517010 - 46516771
Alignment:
| Q |
1 |
ctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtct |
100 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||||||||||| |||||||| | || ||||| |||||| ||||||| |||||||| |||||||| || |
|
|
| T |
46517010 |
ctggtactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccact |
46516911 |
T |
|
| Q |
101 |
tcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggg |
200 |
Q |
| |
|
|||||||||||||||||| ||| || | || ||||| | ||||| || || || | |||||||| || ||||| || ||||| ||||||||||||| |
|
|
| T |
46516910 |
tcagttagtagctacacaattttacatttggttggtgatatcgttgctctaattgactcactgggtgtggaccaagttttccttgtggctcatgattggg |
46516811 |
T |
|
| Q |
201 |
gtgctatcattggttggtatctttgtatgtttcgccctga |
240 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
46516810 |
gtgctatcattggttggtatctttgtttgtttcgtcctga |
46516771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 46479221 - 46478969
Alignment:
| Q |
1 |
ctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtct |
100 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||| ||||||||||||||||| ||||| |||||||| || |||||||||||||| || |
|
|
| T |
46479221 |
ctggtattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgct |
46479122 |
T |
|
| Q |
101 |
tcagttagtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggg |
200 |
Q |
| |
|
||| | || ||||||||| || ||| | || ||||| | ||||| || || || | || || ||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
46479121 |
tcaataagcagctacacaatcttccacttggtgggtgatatcgttgctctcatcgactcactcggcgttgaccaagtgttccttgtagctcatgattggg |
46479022 |
T |
|
| Q |
201 |
gtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagct |
253 |
Q |
| |
|
|||| || |||||||||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
46479021 |
gtgccatgattggttggtatctttgtttatttcgccctgaaaaaatcaaagct |
46478969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 46494555 - 46494482
Alignment:
| Q |
167 |
gttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctga |
240 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
46494555 |
gttgatcaagtcttccttgtggctcatgattggggtgccatcgttggttggtatctttgcttgtttcgccctga |
46494482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 252
Target Start/End: Complemental strand, 46464928 - 46464845
Alignment:
| Q |
167 |
gttgatcaagtgtttcttgttgctcatgattggggtgctatcattggttggtatctttgtatgtttcgccctgaaagaatcaaagc |
252 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||| | | ||||||||||| ||| ||||||| ||||||||| ||||||| |
|
|
| T |
46464928 |
gttgatcaagtcttttttgttgctcatgattggggtgccttaactggttggtatc--tgtttgtttcgtcctgaaagagtcaaagc |
46464845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 46494721 - 46494641
Alignment:
| Q |
1 |
ctggtattcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatgg |
81 |
Q |
| |
|
|||||| || ||||||||||||| || |||||| |||| ||||| ||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
46494721 |
ctggtactcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatgg |
46494641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 7475308 - 7475552
Alignment:
| Q |
8 |
tcatggcgccaccagaatgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcagtta |
107 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| || || ||| | ||||||||||||||||||||||||||| |||| |||||| | | |
|
|
| T |
7475308 |
tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctccatcttcaataa |
7475407 |
T |
|
| Q |
108 |
gtagctacacaggttttcacatagtaggtgaccttgttgcacttatagattttctgggtgttgatcaagtgtttcttgttgctcatgattggggtgctat |
207 |
Q |
| |
|
| ||||||||||| ||||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
7475408 |
gcagctacacagggtttcatatggttggtgaccttgttgcacttatagattttcttggtgttgatcaagtgtttcttgtggctcatgattggggtgccat |
7475507 |
T |
|
| Q |
208 |
cattggttggtatctttgtatgtttcgccctgaaagaatcaaagc |
252 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
7475508 |
cattggttggtacctttgcacgtttcgccctgaaagaatcaaagc |
7475552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University