View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_28 (Length: 217)
Name: NF10488_low_28
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 44027214 - 44027008
Alignment:
| Q |
1 |
tcctcaaccacctctcactgtgtttcaagctcctcctattgatggcagtatcagttacgagaaagtaacaacaacttcttcatcaataagcagaatcagt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44027214 |
tcctcaaccacctctcactgtgtttcaagctcctcctattgatggcagtatcagttacgagaaagtaacaacaactccttcatcaataagcagaatcagt |
44027115 |
T |
|
| Q |
101 |
ccagttattttgttggttataatagtgctagcaattatcttctttctttatggacttttccaattaattatatggcttgtgataaaaagaccatcctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44027114 |
ccagttattttgttggttataatagtactagcaattatcttctttctttatggacttttccaattaattatatggcttgtgataaaaagaccatcctctt |
44027015 |
T |
|
| Q |
201 |
catctca |
207 |
Q |
| |
|
||||||| |
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|
| T |
44027014 |
catctca |
44027008 |
T |
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