View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_30 (Length: 203)
Name: NF10488_low_30
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 27807777 - 27807947
Alignment:
| Q |
18 |
ctttaggccagtctgcaccaagcatgattgcatttacaaaggcaagagttgctgctgcgaaaattttcggtgtgatcgatcacaagccttgtatagacaa |
117 |
Q |
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| T |
27807777 |
ctttaggccagtctgcaccaagcatgattgcatttacaaaggcaagagttgctgctgcgaaaatcttcggtgtgatcgatcacaagccttgtatagacaa |
27807876 |
T |
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| Q |
118 |
gaaaagtgaatcaggtttggagttagaaactgtgacaggactagtggagcttaaaaatgtagacttttcat |
188 |
Q |
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| T |
27807877 |
gaaaagtgaatcaggtttggagttagaaactgtgacaggactagtggagcttaaaaatgtagacttttcat |
27807947 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 41178393 - 41178239
Alignment:
| Q |
29 |
tctgcaccaagcatgattgcatttacaaaggcaagagttgctgctgcgaaaattttcggtgtgatcgatcacaagccttgtatagacaagaaaagtgaat |
128 |
Q |
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|||||||| |||||| ||||||||||||||| |||||||| ||||| || |||||| | | || |||||| ||||| ||||||| | || ||||||| |
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| T |
41178393 |
tctgcaccgagcatggctgcatttacaaaggctagagttgcggctgctaagattttccggataattgatcaccagcctggtatagatagaaacagtgaat |
41178294 |
T |
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| Q |
129 |
caggtttggagttagaaactgtgacaggactagtggagcttaaaaatgtagactt |
183 |
Q |
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| T |
41178293 |
ctggattggaattagagacagttactggacttgttgaactgaaaaatgtggactt |
41178239 |
T |
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