View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10488_low_9 (Length: 439)
Name: NF10488_low_9
Description: NF10488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10488_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 11 - 423
Target Start/End: Original strand, 49244866 - 49245278
Alignment:
| Q |
11 |
gagatgaaggaatcaaaatcaaagaaacatgttgaaggggtttttaatttgttggttccctgtcgtaataggaatcccaattgctctgttacggttactg |
110 |
Q |
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| T |
49244866 |
gagatgaaggaatcaaaatcaaagaaacatgttgaaaggggttttaatttgttggttccctgtcgtaataggaatcccaattgctctgttacggttactg |
49244965 |
T |
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| Q |
111 |
gttcaagcaatgtggctttctttgggattgaatctgtggctaaacctggtttgattactgttattttgaaggtgttcttgaagaatgaagctgaggtttt |
210 |
Q |
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| T |
49244966 |
gttcaagcaatgtggctttctttgggattgaatctgtggctaaacctgggttgattactgttattttgaaggtgttcttgaagaatgaagctgaggtttt |
49245065 |
T |
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| Q |
211 |
agctgctaatgtttctgttaatgatgggaatttgatcttggcaatcactgctttggttcaaaatggtgctgttattgagaagattaagagagagattatg |
310 |
Q |
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| T |
49245066 |
agctgctaatgtttctgttaatgatgggaatttgatcttggcaatcactgctttggttcaaaatggtgctgttattgagaagattaagagagagattatg |
49245165 |
T |
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| Q |
311 |
agtttgtaggttcaattgatgaataattggtttgtttttctttgggatttaaaggttgattataattaatcatggtgattgatgttaagaccatggtgac |
410 |
Q |
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| T |
49245166 |
agtttgtaggttcaattgatgaataattggtttgtttttctttgggatttaaaggttgattataattaatcattgtgattgatgttaagaccatggtgac |
49245265 |
T |
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| Q |
411 |
atggtacatatat |
423 |
Q |
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| T |
49245266 |
atggtacatatat |
49245278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 275
Target Start/End: Original strand, 49059376 - 49059504
Alignment:
| Q |
147 |
tggctaaacctggtttgattactgttattttgaaggtgttcttgaagaatgaagctgaggttttagctgctaatgtttctgttaatgatgggaatttgat |
246 |
Q |
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| T |
49059376 |
tggctagacctggtttggctactgcgattttgaagatatttgtggacaatcaagctgagattttagtggcaaatgtctctgttaatgatggaaatttgat |
49059475 |
T |
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| Q |
247 |
cttggcaatcactgctttggttcaaaatg |
275 |
Q |
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| T |
49059476 |
cttggcaatcactgcattggttcaaaatg |
49059504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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