View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_high_2 (Length: 400)
Name: NF10489_high_2
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 289
Target Start/End: Complemental strand, 47745678 - 47745418
Alignment:
| Q |
29 |
gtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcagggcaagattg |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47745678 |
gtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattg |
47745579 |
T |
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| Q |
129 |
caatgattgtttagagcgtgctatttcagaaattccaagtgtttttaataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa |
228 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||||| |||||| |||||| ||||||||||||||| |
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| T |
47745578 |
caatgattgtttagagcgtgctatttcagaaactccaagttttttttataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaa |
47745479 |
T |
|
| Q |
229 |
accaatcccttctatggtcctacgacagtaatagacccagatgaaacctccccatcagaag |
289 |
Q |
| |
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| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
47745478 |
atatattccttctatggtcctacgacagtaatagaccaagatgaaacctccccaccagaag |
47745418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 29 - 329
Target Start/End: Complemental strand, 47717889 - 47717587
Alignment:
| Q |
29 |
gtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcagggcaagattg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||| |
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| T |
47717889 |
gtgattctcgtcgtaagtttgctaccgctaatgcaactttgaattttgaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattg |
47717790 |
T |
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| Q |
129 |
caatgattgtttagagcgtgctatttcagaaattccaagtgtttttaataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa |
228 |
Q |
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| T |
47717789 |
caatgattgtttagagcgtgctatttcagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaa |
47717690 |
T |
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| Q |
229 |
accaatcccttctatggtcctacgacagtaatagacccagatgaaacctccccatca---gaaggtgattagtaattttcattagttaatcatacttaat |
325 |
Q |
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| | || ||||||||| |||||| | ||||||||||||| |||||||||||||||| |||||| |||| ||||| || ||| |||||||| |||||| |
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| T |
47717689 |
atctattccttctatgatcctacacctgtaatagacccaggtgaaacctccccatcagaagaaggtaattactaattgtcgttaattaatcat-cttaat |
47717591 |
T |
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| Q |
326 |
tgct |
329 |
Q |
| |
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|||| |
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| T |
47717590 |
tgct |
47717587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 174 - 325
Target Start/End: Complemental strand, 47704943 - 47704792
Alignment:
| Q |
174 |
taataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaaaccaatcccttctatggtcctacgacagtaatagacccagatgaa |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47704943 |
taataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaaaccaatcccttctatggtcctacgacagtaatagacccagatgaa |
47704844 |
T |
|
| Q |
274 |
acctccccatcagaaggtgattagtaattttcattagttaatcatacttaat |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47704843 |
acctccccatcagaaggtgattagtaattttcattagttaatcatacttaat |
47704792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 29 - 329
Target Start/End: Complemental strand, 47760010 - 47759699
Alignment:
| Q |
29 |
gtgattctcgtcgtaagtttgctaccgctaatgcaact---------ttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcagg |
119 |
Q |
| |
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|||||||||||||||| |||||||| | |||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||| ||||||| |
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| T |
47760010 |
gtgattctcgtcgtaaatttgctacagataatgcaactgatgtaaatttgaattttcaaaccatatatggtcttgttcagtgcacacctgatttgtcaga |
47759911 |
T |
|
| Q |
120 |
gcaagattgcaatgattgtttagagcgtgctatttcagaaattccaagtgtttttaataacaagattggtggaagagttatcaaaccaagttgcaatatt |
219 |
Q |
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||||||||||||| |||||||||| ||||||| ||||| ||||||||| || |||||||||||||||||| |||||| ||||||||||||| ||||| |
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| T |
47759910 |
gcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaataacaagattggtggtagagttctcaaaccaagttgtaatatc |
47759811 |
T |
|
| Q |
220 |
agatatgaaaccaatcccttctatggtcctacgacagtaatagacccagatgaaacctccccatca---gaaggtgattagtaattttcattagttaatc |
316 |
Q |
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|||||||||||| | |||||||| |||||| | | ||||||||||| |||||||||||||||| |||||| |||| ||||| |||||| |||||| |
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| T |
47759810 |
agatatgaaacctctagcttctatgatcctacacctgcaatagacccaggtgaaacctccccatcagaagaaggtaattactaattgtcattaattaatc |
47759711 |
T |
|
| Q |
317 |
atacttaattgct |
329 |
Q |
| |
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|| |||||||||| |
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| T |
47759710 |
at-cttaattgct |
47759699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 66 - 289
Target Start/End: Complemental strand, 47713049 - 47712826
Alignment:
| Q |
66 |
tttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcagggcaagattgcaatgattgtttagagcgtgctatttcagaaattcca |
165 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
47713049 |
tttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattcca |
47712950 |
T |
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| Q |
166 |
agtgtttttaataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaaaccaatcccttctatggtcctacgacagtaatagacc |
265 |
Q |
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| | | | |||||||||||||| | |||||| ||||||||||||| ||||||||||||||| | ||| ||||| || |||||| ||||||||| ||| |
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| T |
47712949 |
atttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgatcctacaacagtaataaacc |
47712850 |
T |
|
| Q |
266 |
cagatgaaacctccccatcagaag |
289 |
Q |
| |
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||||||| |||||||||||||| |
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| T |
47712849 |
aagatgaacactccccatcagaag |
47712826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 47782236 - 47782277
Alignment:
| Q |
75 |
tgaaaccatatatggtcttgtgcagtgtacacctgacttgtc |
116 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| |
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| T |
47782236 |
tgaaacaatatatggtcttgttcagtgtacacctgacttgtc |
47782277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 28830976 - 28830930
Alignment:
| Q |
183 |
gattggtggaagagttatcaaaccaagttgcaatattagatatgaaa |
229 |
Q |
| |
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|||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
28830976 |
gattggtgctagagttatgaaaccaagttgtaatattagatatgaaa |
28830930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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