View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10489_high_3 (Length: 386)

Name: NF10489_high_3
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10489_high_3
NF10489_high_3
[»] chr4 (16 HSPs)
chr4 (19-377)||(17644692-17645050)
chr4 (25-251)||(17604737-17604963)
chr4 (23-281)||(17631290-17631548)
chr4 (26-253)||(16481238-16481465)
chr4 (23-282)||(17645336-17645592)
chr4 (23-171)||(29883364-29883512)
chr4 (51-161)||(20751390-20751500)
chr4 (51-258)||(17950017-17950221)
chr4 (51-258)||(17953869-17954073)
chr4 (23-273)||(17664027-17664273)
chr4 (290-377)||(17631164-17631251)
chr4 (26-160)||(17676321-17676455)
chr4 (104-200)||(29880324-29880417)
chr4 (55-286)||(18766462-18766690)
chr4 (23-159)||(17631958-17632094)
chr4 (53-159)||(16480719-16480825)


Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 17645050 - 17644692
Alignment:
Q  19 gaataccattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17645050 gaataccattcacaagttggctactatgattgataggataataatgtttttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttg 17644951  T
Q  119 taattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaac 218  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17644950 tgattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagatactggaaac 17644851  T
Q  219 ccagaaagattactttgtgaattgttaacaagaagaggaccataaataggatgcacatgatgtcttggtactggaggcgaaaactgaaccggaaccggtt 318  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17644850 ccagaaagattactttgtgaattgttaacaaggagaggaccagaaataggatgcacatgatgtcttggtactggaggcgaaaactgaaccggaactggtt 17644751  T
Q  319 gccttgatgcatttgattcatttcctgtaatgttcttaattaaactcttgaattcatct 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17644750 gccttgatgcatttgattcatttcctgtaatgttcttaattaaactcttgaattcatct 17644692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 17604963 - 17604737
Alignment:
Q  25 cattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattg 124  Q
    ||||||||| |||| |||||  |||  |||||||||||||||||||||||| || ||||||||||| ||||| |||| ||||||| ||| ||||| ||||    
T  17604963 cattcacaaattggttactaccattagtaggataataatgttcttgagatttaattattggatgatattgaaaatttatattgttgaagacttgtgattg 17604864  T
Q  125 aggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaa 224  Q
    | |||||||||| || ||||| ||||||| |||||||||||||||||||||   |  ||||||| ||||||||||  ||| || || ||||||| ||  |    
T  17604863 atgagggtaaggctgaaactgattacctcctgaattaccaatgttcagcggaaataggtcttgagagtttctcatcaaagaagatattggaaactcaaca 17604764  T
Q  225 agattactttgtgaattgttaacaaga 251  Q
    | ||||||||||||||| | |||||||    
T  17604763 atattactttgtgaattttcaacaaga 17604737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 281
Target Start/End: Complemental strand, 17631548 - 17631290
Alignment:
Q  23 accattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaat 122  Q
    ||||||||||| |||| | |||  ||| ||||||||||||||||||||||||  || |||||||| || |||||||||| ||||||| ||| ||||| ||    
T  17631548 accattcacaaattggttgctaccattaataggataataatgttcttgagatgtaattattggattatattgaacatttatattgttgaagacttgtgat 17631449  T
Q  123 tgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccag 222  Q
    |||  |||||||| ||| ||||| ||||||| ||||||||||||||| ||||||  | |||||||| |||||||||| |||| || || ||||||| ||     
T  17631448 tgattagggtaagattgaaactgattacctcctgaattaccaatgtttagcggcaataagtcttgagagtttctcatcgaagcagatattggaaactcaa 17631349  T
Q  223 aaagattactttgtgaattgttaacaagaagaggaccataaataggatgcacatgatgt 281  Q
     |||||||||  ||| ||||| ||||||| ||  ||||  |||||| |||||| |||||    
T  17631348 caagattactccgtggattgtcaacaagaggattaccagtaataggctgcacaggatgt 17631290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 16481238 - 16481465
Alignment:
Q  26 attcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattga 125  Q
    |||||||| |||| |||||  ||| || |||||||||||||| || |||| || |||||| |||| |||||||||| | ||||| ||| ||||| |||||    
T  16481238 attcacaatttggttactaccattaattggataataatgttcatgggatttaattattggctgatattgaacatttatgttgttgaagacttgtgattga 16481337  T
Q  126 ggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaa 225  Q
     |||| |||||||| ||||| ||||||| ||||||||||||||||   ||   |  ||||||| |||||||||| |||| || || |||||||  |  ||    
T  16481338 tgaggataaggttgaaactgattacctcctgaattaccaatgttcgatgggagtatgtcttgagagtttctcatcgaagaagatattggaaacttaacaa 16481437  T
Q  226 gattactttgtgaattgttaacaagaag 253  Q
    ||||||| || ||||||| |||||||||    
T  16481438 gattactatgcgaattgtcaacaagaag 16481465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 282
Target Start/End: Complemental strand, 17645592 - 17645336
Alignment:
Q  23 accattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaat 122  Q
    |||||| |||| |||| |||||  ||| ||||||||  ||||||| |||||||||| |||||| |||| |||||||||| ||||||| ||  ||| |  |    
T  17645592 accattaacaacttggttactaccattcataggatacaaatgttcctgagattgaattattggctgatgttgaacatttatattgttgaatacttttggt 17645493  T
Q  123 tgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccag 222  Q
    ||||||||  |  |||| ||||||||||||||||||||||| | |||||     ||||  |||||||||||||||||| ||| ||  |||||| || ||     
T  17645492 tgaggaggccatagttgaaactggttacctcttgaattacccaagttca---atgttggatcttgaaagtttctcatgaaagaagaaactggagactcaa 17645396  T
Q  223 aaagattactttgtgaattgttaacaagaagaggaccataaataggatgcacatgatgtc 282  Q
     ||||||| | |||||||||| |||||||  ||||| |  |||||| |||||||||||||    
T  17645395 caagattattctgtgaattgtaaacaagagaaggacgagtaataggttgcacatgatgtc 17645336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 29883512 - 29883364
Alignment:
Q  23 accattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaat 122  Q
    |||||||||||| |||||||||  ||| ||||||||||| |||  ||| ||||||| ||||   |||  |||||||||   |||||||||  ||||| ||    
T  29883512 accattcacaagctggctactaccattcataggataatattgtggttgggattgaattattaattgagattgaacattcacattgttcaatacttgtgat 29883413  T
Q  123 tgaggagggtaaggttggaactggttacctcttgaattaccaatgttca 171  Q
    |||| |||||||||||| |||||||||||||||||| || ||| |||||    
T  29883412 tgagtagggtaaggttgaaactggttacctcttgaactatcaaagttca 29883364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 20751390 - 20751500
Alignment:
Q  51 ataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttac 150  Q
    ||||||||||||| ||||||||||||   |||||| |||| |||||||||| ||||||| ||   ||||  |||| ||||||||||||| || |||||||    
T  20751390 ataggataataatattcttgagattgggttattggctgatattgaacatttatattgttgaataattgtggttgatgagggtaaggttgaaaatggttac 20751489  T
Q  151 ctcttgaatta 161  Q
    ||  |||||||    
T  20751490 cttctgaatta 20751500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 258
Target Start/End: Original strand, 17950017 - 17950221
Alignment:
Q  51 ataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttac 150  Q
    ||||||||||||| ||||||||||||   |||||||| || ||| |||||| ||||||| ||   ||||  |||| ||||||||||||| ||  ||||||    
T  17950017 ataggataataatattcttgagattgggttattggattatattggacatttatattgttgaataattgtggttgatgagggtaaggttgaaaagggttac 17950116  T
Q  151 ctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaag 250  Q
    ||  ||||||||||| |||||      |||| |||||||||||||||||| ||| ||  | |||| || |   ||||||| | |||||||||||||| ||    
T  17950117 cttatgaattaccaaagttca---tatttgactcttgaaagtttctcatgaaagcagaaattggagactcgtcaagattattctgtgaattgttaactag 17950213  T
Q  251 aagaggac 258  Q
    | ||||||    
T  17950214 aggaggac 17950221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 258
Target Start/End: Original strand, 17953869 - 17954073
Alignment:
Q  51 ataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttac 150  Q
    ||||||||||||| ||||||||||||   |||||||| || ||| |||||| ||||||| ||   ||||  |||| ||||||||||||| ||  ||||||    
T  17953869 ataggataataatattcttgagattgggttattggattatattggacatttatattgttgaataattgtggttgatgagggtaaggttgaaaagggttac 17953968  T
Q  151 ctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaag 250  Q
    ||  ||||||||||| |||||      |||| |||||||||||||||||| ||| ||  | |||| || |   ||||||| | |||||||||||||| ||    
T  17953969 cttatgaattaccaaagttca---tatttgactcttgaaagtttctcatgaaagcagaaattggagactcgtcaagattattctgtgaattgttaactag 17954065  T
Q  251 aagaggac 258  Q
    | ||||||    
T  17954066 aggaggac 17954073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 273
Target Start/End: Original strand, 17664027 - 17664273
Alignment:
Q  23 accattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaat 122  Q
    |||||||||||||||| |||||  ||| |||||||||| |||||| ||  || ||| |||||| | || ||| |||| |  |||||| ||  |||||  |    
T  17664027 accattcacaagttggttactaccattcataggataatgatgttcctggtatggaattattggctaatattggacatctaaattgttgaatacttgtggt 17664126  T
Q  123 tgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccag 222  Q
    ||| ||||||| | ||| ||||||||||||||||||||| | || ||||    | |||| |||||||| ||||||||| ||| ||  | |||| || ||     
T  17664127 tgatgagggtaggtttgaaactggttacctcttgaattatc-atattca---tcattgaatcttgaaattttctcatgaaagcagaaattggagactcaa 17664222  T
Q  223 aaagattactttgtgaattgttaacaagaagaggaccataaataggatgca 273  Q
    |||||||| ||| |||||||| ||||| | || ||||| ||||||| ||||    
T  17664223 aaagattattttctgaattgtaaacaaaaggatgaccagaaataggttgca 17664273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 290 - 377
Target Start/End: Complemental strand, 17631251 - 17631164
Alignment:
Q  290 tggaggcgaaaactgaaccggaaccggttgccttgatgcatttgattcatttcctgtaatgttcttaattaaactcttgaattcatct 377  Q
    ||||| ||||| |||||| ||| | ||| ||||| |||||||||||| |||||| ||||||| || ||  ||||||||||||||||||    
T  17631251 tggagccgaaacctgaactggatctggtggccttaatgcatttgatttatttcccgtaatgtgctgaacaaaactcttgaattcatct 17631164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 17676321 - 17676455
Alignment:
Q  26 attcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattga 125  Q
    ||||||||||||| |||||  ||| |||||||||| |||||| ||  || ||| |||||| |||| ||| |||| |  |||||| |   |||||  ||||    
T  17676321 attcacaagttggttactaccattcataggataatgatgttcctggtatggaattattggttgatattggacatctaaattgttgactacttgtggttga 17676420  T
Q  126 ggagggtaaggttggaactggttacctcttgaatt 160  Q
     ||||| ||||||| ||||||||||||||||||||    
T  17676421 tgagggaaaggttgaaactggttacctcttgaatt 17676455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 29880324 - 29880417
Alignment:
Q  104 attgttcaaggcttgtaattgaggagggtaaggttggaactggttacctcttgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatg 200  Q
    |||||||||  ||||| |||||||||||||||  || || |||||||||||||||||| ||| |||||    |||||||| |||||| |||||||||    
T  29880324 attgttcaatacttgtgattgaggagggtaagactgaaattggttacctcttgaattatcaaagttca---tcgttgagttttgaaaatttctcatg 29880417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 286
Target Start/End: Complemental strand, 18766690 - 18766462
Alignment:
Q  55 gataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacctct 154  Q
    ||||||||| ||||||||||||   |||||| |||| ||| |||||| ||||||| ||   ||||  |||| ||||||||||||| ||   |||||||      
T  18766690 gataataatattcttgagattgggttattggctgatattggacatttatattgttgaataattgtggttgatgagggtaaggttgaaaaatgttaccttc 18766591  T
Q  155 tgaattaccaatgttcagcggcgttgagtcttgaaagtttctcatggaagtagctactggaaacccagaaagattactttgtgaattgttaacaagaaga 254  Q
    ||||||||||| |||||      |||| |||||||||||||||||  ||| ||  | || | || || | |||||| ||| |||||||||||| ||| ||    
T  18766590 tgaattaccaaagttca---tatttgactcttgaaagtttctcataaaagcagaaattgaagactcatagagattattttatgaattgttaactagagga 18766494  T
Q  255 ggaccataaataggatgcacatgatgtcttgg 286  Q
    ||||||  || ||  |||||||||||||||||    
T  18766493 ggaccagtaacagactgcacatgatgtcttgg 18766462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 17632094 - 17631958
Alignment:
Q  23 accattcacaagttggctactatgattgataggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaat 122  Q
    ||||||||||| |||| |||||  ||| | |||||  |||| ||| |||||||||| |||||| |||| |||| ||||| | ||||| ||  |||||  |    
T  17632094 accattcacaacttggttactaccattcagaggatcgtaatattcatgagattgaattattggctgatattgagcatttatgttgttgaatacttgtggt 17631995  T
Q  123 tgaggagggtaaggttggaactggttacctcttgaat 159  Q
    |||| ||||||| |||| ||| ||||| |||||||||    
T  17631994 tgagcagggtaaagttgaaacgggttaactcttgaat 17631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 16480719 - 16480825
Alignment:
Q  53 aggataataatgttcttgagattgaaatattggatgattttgaacatttgtattgttcaaggcttgtaattgaggagggtaaggttggaactggttacct 152  Q
    ||||||||||| ||| |||||||| | |||||| |||| |||  ||||| ||||||| ||  |||||  |||||||||| ||  ||| || |||||||||    
T  16480719 aggataataatattcctgagattggattattggctgatattgcgcatttatattgttgaatacttgtggttgaggagggcaaacttgaaattggttacct 16480818  T
Q  153 cttgaat 159  Q
    |||||||    
T  16480819 cttgaat 16480825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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