View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10489_high_6 (Length: 352)

Name: NF10489_high_6
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10489_high_6
NF10489_high_6
[»] chr3 (5 HSPs)
chr3 (18-303)||(5739192-5739476)
chr3 (18-303)||(5776304-5776588)
chr3 (65-303)||(40874860-40875097)
chr3 (65-303)||(15271928-15272165)
chr3 (170-296)||(7775387-7775513)
[»] chr6 (3 HSPs)
chr6 (65-303)||(11326690-11326927)
chr6 (65-303)||(13223100-13223337)
chr6 (36-149)||(17537529-17537641)
[»] chr8 (1 HSPs)
chr8 (187-303)||(23899180-23899296)
[»] chr4 (1 HSPs)
chr4 (125-296)||(52410202-52410373)
[»] chr1 (1 HSPs)
chr1 (239-300)||(46186355-46186416)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 5739192 - 5739476
Alignment:
Q  18 agatccaacatgcacctcaagttctgaccatgttgtatacctccgagttttatgcttactttcataatcctctcttttttctaccgctaagcggctatca 117  Q
    ||||||| ||||||||||||||| |||| |||||||| |||| |||| | |||||||| ||||||||||||||||||||||| ||  |||||||||||||    
T  5739192 agatccatcatgcacctcaagttttgac-atgttgtaaacctgcgagatgtatgcttattttcataatcctctcttttttctgcctgtaagcggctatca 5739290  T
Q  118 agcgcctttttcaaattttaacacaaattcttgcaattttgttgaagcatttacaaaagaatcaaaa-aatgaattaatgctttcacttctttgagttgt 216  Q
    || ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||     
T  5739291 agagcctttt-caaattttaatacaaattcttgcaatgttgttgaagcatttacaaaagaatcaaaaaaatgaattaaagctttcacttctttgaattgc 5739389  T
Q  217 attcatcccaacaaaaaattcacttctattataaaccggtatccatgatgctctgatactatataacccttgaagccattcattgtt 303  Q
    |||||| ||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  5739390 attcattccagcaaaaaaatcacttctattataaaccggtatcaatgattctctgatactatataacccttgaagccattcattgtt 5739476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 5776304 - 5776588
Alignment:
Q  18 agatccaacatgcacctcaagttctgaccatgttgtatacctccgagttttatgcttactttcataatcctctcttttttctaccgctaagcggctatca 117  Q
    ||||||| ||||||||||||||| |||| |||||||| |||| |||| | |||||||| ||||||||||||||||||||||| ||  |||||||||||||    
T  5776304 agatccatcatgcacctcaagttttgac-atgttgtaaacctgcgagatgtatgcttattttcataatcctctcttttttctgcctgtaagcggctatca 5776402  T
Q  118 agcgcctttttcaaattttaacacaaattcttgcaattttgttgaagcatttacaaaagaatcaaaa-aatgaattaatgctttcacttctttgagttgt 216  Q
    || ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||     
T  5776403 agagcctttt-caaattttaatacaaattcttgcaatgttgttgaagcatttacaaaagaatcaaaaaaatgaattaaagctttcacttctttgaattgc 5776501  T
Q  217 attcatcccaacaaaaaattcacttctattataaaccggtatccatgatgctctgatactatataacccttgaagccattcattgtt 303  Q
    |||||| ||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  5776502 attcattccagcaaaaaaatcacttctattataaaccggtatcaatgattctctgatactatataacccttgaagccattcattgtt 5776588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 65 - 303
Target Start/End: Complemental strand, 40875097 - 40874860
Alignment:
Q  65 ttttatgcttactttcataatcctctcttttttctaccgctaagcggctatcaagcgcctttttcaaattttaacacaaattcttgcaattttgttgaag 164  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||| |    
T  40875097 ttttatgcctactttcataatcctctcttttttctacttctaagcggctatcaaccgcctttt-caaatttcaacacaaattcttgcaatgttgttgatg 40874999  T
Q  165 catttacaaaagaatcaaaaaatgaattaatgctttcacttctttgagttgtattcatcccaacaaaaaattcacttctattataaaccggtatccatga 264  Q
    |||| ||||||||||||||||| | ||| ||||| |||||||||||| |||||||||||||| |||||||    |||||||||||||| |||||||| ||    
T  40874998 cattcacaaaagaatcaaaaaacgcattgatgctctcacttctttgacttgtattcatcccagcaaaaaaacagcttctattataaactggtatccaaga 40874899  T
Q  265 tgctctgatactatataacccttgaagccattcattgtt 303  Q
    | |||| ||  ||||||||||||||||||||||||||||    
T  40874898 ttctctaattttatataacccttgaagccattcattgtt 40874860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 65 - 303
Target Start/End: Original strand, 15271928 - 15272165
Alignment:
Q  65 ttttatgcttactttcataatcctctcttttttctaccgctaagcggctatcaagcgcctttttcaaattttaacacaaattcttgcaattttgttgaag 164  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||| || |    
T  15271928 ttttatgcctactttcataatcctctcttttttctacttctaagcggctatcaaccgcctttt-caaatttcaacacaaattcttgcaatgttgtagatg 15272026  T
Q  165 catttacaaaagaatcaaaaaatgaattaatgctttcacttctttgagttgtattcatcccaacaaaaaattcacttctattataaaccggtatccatga 264  Q
    |||| ||||||||||||||||| | ||| ||||| |||||||||||| |||||||||||||| |||||||    |||||||||||||| |||||||| ||    
T  15272027 cattcacaaaagaatcaaaaaacgcattgatgctctcacttctttgacttgtattcatcccagcaaaaaaacagcttctattataaactggtatccaaga 15272126  T
Q  265 tgctctgatactatataacccttgaagccattcattgtt 303  Q
    | |||| ||  ||||||||||||||||||||||||||||    
T  15272127 ttctctaattttatataacccttgaagccattcattgtt 15272165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 7775387 - 7775513
Alignment:
Q  170 acaaaagaatcaaaaaatgaattaatgctttcacttctttgagttgtattcatcccaacaaaaaattcacttctattataaaccggtatccatgatgctc 269  Q
    ||||| ||||||||||| | ||||||||| ||||||||||| || || ||||||||| |||||||   |||||| |||||||  |||| ||||||  |||    
T  7775387 acaaacgaatcaaaaaaagcattaatgctctcacttctttgtgtagtgttcatcccagcaaaaaaagtacttctgttataaataggtacccatgactctc 7775486  T
Q  270 tgatactatataacccttgaagccatt 296  Q
    | ||  |||| || |||||||||||||    
T  7775487 ttattttatacaaaccttgaagccatt 7775513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 65 - 303
Target Start/End: Complemental strand, 11326927 - 11326690
Alignment:
Q  65 ttttatgcttactttcataatcctctcttttttctaccgctaagcggctatcaagcgcctttttcaaattttaacacaaattcttgcaattttgttgaag 164  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||| || |    
T  11326927 ttttatgcctactttcataatcctctcttttttctacttctaagcggctatcaaccgcctttt-caaatttcaacacaaattcttgcaatgttgtagatg 11326829  T
Q  165 catttacaaaagaatcaaaaaatgaattaatgctttcacttctttgagttgtattcatcccaacaaaaaattcacttctattataaaccggtatccatga 264  Q
    |||| ||||||||||||||||| | ||| ||||| |||||||||||| |||||||||||||| |||||||    |||||||||||||| |||||||| ||    
T  11326828 cattcacaaaagaatcaaaaaacgcattgatgctctcacttctttgacttgtattcatcccagcaaaaaaacagcttctattataaactggtatccaaga 11326729  T
Q  265 tgctctgatactatataacccttgaagccattcattgtt 303  Q
    | |||| ||  ||||||||||||||||||||||||||||    
T  11326728 ttctctaattttatataacccttgaagccattcattgtt 11326690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 65 - 303
Target Start/End: Original strand, 13223100 - 13223337
Alignment:
Q  65 ttttatgcttactttcataatcctctcttttttctaccgctaagcggctatcaagcgcctttttcaaattttaacacaaattcttgcaattttgttgaag 164  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||| |||||||||||||||||| |||| || |    
T  13223100 ttttatgcctactttcataatcctctcttttttctacttctaagcggctatcaaccgcctttt-caaatttcaacacaaattcttgcaatgttgtagatg 13223198  T
Q  165 catttacaaaagaatcaaaaaatgaattaatgctttcacttctttgagttgtattcatcccaacaaaaaattcacttctattataaaccggtatccatga 264  Q
    |||| ||||||||||||||||| | ||| ||||| |||||||||||| |||||||||||||| |||||||    |||||||||||||| |||||||| ||    
T  13223199 cattcacaaaagaatcaaaaaacgcattgatgctctcacttctttgacttgtattcatcccagcaaaaaaacagcttctattataaactggtatccaaga 13223298  T
Q  265 tgctctgatactatataacccttgaagccattcattgtt 303  Q
    | |||| ||  ||||||||||||||||||||||||||||    
T  13223299 ttctctaattttatataacccttgaagccattcattgtt 13223337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 17537641 - 17537529
Alignment:
Q  36 aagttctgaccatgttgtatacctccgagttttatgcttactttcataatcctctcttttttctaccgctaagcggctatcaagcgcctttttcaaattt 135  Q
    ||||| ||||||||||||| || |  ||| |||||| ||||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||     
T  17537641 aagttttgaccatgttgtaaacgtgtgagatttatggttactttcacaatcctctcttttttctgcctctaagcggctatcaagcg-ctttttcaaattg 17537543  T
Q  136 taacacaaattctt 149  Q
    ||||||||||||||    
T  17537542 taacacaaattctt 17537529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 23899296 - 23899180
Alignment:
Q  187 tgaattaatgctttcacttctttgagttgtattcatcccaacaaaaaattcacttctattataaaccggtatccatgatgctctgatactatataaccct 286  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||| |    
T  23899296 tgaattaatgctttcacttctttgaattgcattcatcccagcaaaaaaatcacttctattataaaccggtatcaatgattctctgatactatataacctt 23899197  T
Q  287 tgaagccattcattgtt 303  Q
    |||||||||||||||||    
T  23899196 tgaagccattcattgtt 23899180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 296
Target Start/End: Complemental strand, 52410373 - 52410202
Alignment:
Q  125 ttttcaaattttaacacaaattcttgcaattttgttgaagcatttacaaaagaatcaaaaaatgaattaatgctttcacttctttgagttgtattcatcc 224  Q
    ||||||||||| |  ||||| ||||| | | | ||||| | ||| ||||| ||||||||||| | ||||||||| ||||||||||| || || |||||||    
T  52410373 ttttcaaatttcactacaaaatcttgtagtatagttgacgaattaacaaatgaatcaaaaaaagcattaatgctctcacttctttgtgtagtgttcatcc 52410274  T
Q  225 caacaaaaaattcacttctattataaaccggtatccatgatgctctgatactatataacccttgaagccatt 296  Q
    || |||||||   |||||| |||||||  |||| ||||||  |||| ||  |||| || |||||||||||||    
T  52410273 cagcaaaaaaagtacttctgttataaataggtacccatgactctcttattttatacaaaccttgaagccatt 52410202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 300
Target Start/End: Original strand, 46186355 - 46186416
Alignment:
Q  239 cttctattataaaccggtatccatgatgctctgatactatataacccttgaagccattcatt 300  Q
    |||||||||||||  |||||||||||| |||| ||  | |||||||||||||||||| ||||    
T  46186355 cttctattataaattggtatccatgattctctaatcttgtataacccttgaagccatacatt 46186416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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