View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10489_low_1 (Length: 478)

Name: NF10489_low_1
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10489_low_1
NF10489_low_1
[»] chr7 (6 HSPs)
chr7 (129-312)||(13937597-13937780)
chr7 (129-312)||(39286628-39286811)
chr7 (129-312)||(9987422-9987604)
chr7 (132-308)||(17218303-17218479)
chr7 (3-62)||(39286878-39286937)
chr7 (3-60)||(13937850-13937907)
[»] chr3 (3 HSPs)
chr3 (129-312)||(15259681-15259864)
chr3 (132-308)||(33590845-33591020)
chr3 (3-62)||(15259555-15259614)
[»] chr2 (2 HSPs)
chr2 (140-312)||(31140328-31140500)
chr2 (3-62)||(31140588-31140647)
[»] chr4 (5 HSPs)
chr4 (297-456)||(18747729-18747886)
chr4 (335-463)||(52367694-52367822)
chr4 (133-274)||(30231040-30231180)
chr4 (184-266)||(18748671-18748751)
chr4 (163-207)||(18748626-18748670)
[»] scaffold0094 (1 HSPs)
scaffold0094 (129-308)||(6810-6988)
[»] chr8 (3 HSPs)
chr8 (332-455)||(24252754-24252877)
chr8 (129-312)||(14330807-14330989)
chr8 (163-273)||(24251537-24251645)
[»] chr5 (2 HSPs)
chr5 (129-312)||(21724279-21724461)
chr5 (129-312)||(21804015-21804197)
[»] chr1 (2 HSPs)
chr1 (332-455)||(23247918-23248041)
chr1 (133-274)||(23246701-23246840)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 13937780 - 13937597
Alignment:
Q  129 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  13937780 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagaacactaaaaaccctaataagtaaaacaaaataaatacaagaaattgaaccaaaaat 13937681  T
Q  229 caggtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaataccttgaaa 312  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13937680 caagtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaataccttgaaa 13937597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 39286811 - 39286628
Alignment:
Q  129 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||    
T  39286811 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagaacactaaaaaccctaataagtaaaacaaaataaaaacaagaaattgaaccaaaaat 39286712  T
Q  229 caggtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaataccttgaaa 312  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39286711 caagtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtgaatagtaataccttgaaa 39286628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 9987604 - 9987422
Alignment:
Q  129 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 228  Q
    |||||||||||| ||||  |||||| ||||| | |||||||||||||||||||| ||||| || ||||||||||||||| |  |||||||||| || |||    
T  9987604 tatatttcaacatcaaacatgaatctaggtctaggtagttaagcacactaaaaaccctaataaataaaacaaaataaaccct-gaaattgaacaaagaat 9987506  T
Q  229 caggtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaataccttgaaa 312  Q
    |||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| || ||||||||||||||    
T  9987505 caggcacaagtttatgggaacatggttgatttgttgaaaagaacatatattataatagagagagtgaatggtaataccttgaaa 9987422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 17218303 - 17218479
Alignment:
Q  132 atttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcag 231  Q
    ||||||||| ||||  |||||||||||| |  | || |||||| ||||||  ||||| |||||||||||||||||| | | |||   |||||| |||||     
T  17218303 atttcaacagcaaacatgaatccaggtctagatggtaaagcactctaaaatccctaataagtaaaacaaaataaacccta-aaacaaaaccaagaatcaa 17218401  T
Q  232 gtacaagtttatgggaacatggttgatttgttgaagagaacacacatta-taatagagagagtggatagtaatacctt 308  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||| || ||||||||||    
T  17218402 gtacaagtttatgggaacatggttgattttttgaagataacacatattattaatagagagagtgaatggtaatacctt 17218479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 39286937 - 39286878
Alignment:
Q  3 caaaggaacacccacctaagcaaaacagcacctaaaaacaatgctaagggaataaaaatc 62  Q
    ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  39286937 caaagcaacacccacctaagcaaaacatcacctaaaaacaatactaagggaataaaaatc 39286878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 13937907 - 13937850
Alignment:
Q  3 caaaggaacacccacctaagcaaaacagcacctaaaaacaatgctaagggaataaaaa 60  Q
    ||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  13937907 caaagcaacacccacctaagcaaaacatcacctaaaaacaatactaagggaataaaaa 13937850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 129 - 312
Target Start/End: Original strand, 15259681 - 15259864
Alignment:
Q  129 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 228  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||    
T  15259681 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagaacactaaaaaccctaataagtaaaacaaaataaacacaagaaattgaaccaaaaat 15259780  T
Q  229 caggtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaataccttgaaa 312  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15259781 caagtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtgaatagtaataccttgaaa 15259864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 132 - 308
Target Start/End: Complemental strand, 33591020 - 33590845
Alignment:
Q  132 atttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcag 231  Q
    ||||||||| |||| ||||||||||||| | |||||||||||||| ||||| | ||| |||||||| ||||||||  | | ||||||||| || ||||||    
T  33591020 atttcaacagcaaacgtgaatccaggtctaggtagttaagcacaccaaaaaccttaataagtaaaataaaataaatccta-aaattgaactaagaatcag 33590922  T
Q  232 gtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaatacctt 308  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||| || || |||||||    
T  33590921 gtacaagtttatggaaacatggttgatttgttgaagagaatacatattgtaatagagagagtgaatggtgatacctt 33590845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 15259555 - 15259614
Alignment:
Q  3 caaaggaacacccacctaagcaaaacagcacctaaaaacaatgctaagggaataaaaatc 62  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  15259555 caaagcaacacccacctaagcaaaacagcacctaaaaacaatactaagggagtaaaaatc 15259614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 140 - 312
Target Start/End: Complemental strand, 31140500 - 31140328
Alignment:
Q  140 aacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcaggtacaagt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31140500 aacaaaggtgaatccaggtccatgtagttaagcacactaaaaaccctattaagtaaaacaaaataaacacaagaaattgaaccaaaaatcaggtacaaat 31140401  T
Q  240 ttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaataccttgaaa 312  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  31140400 ttatgggaacatggttgatttgttgaagagaacacccattataatagagagagtgggtagtaataccttgaaa 31140328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 31140647 - 31140588
Alignment:
Q  3 caaaggaacacccacctaagcaaaacagcacctaaaaacaatgctaagggaataaaaatc 62  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31140647 caaagcaacacccacctaagcaaaacagcacctaaaaacaatactaagggaataaaaatc 31140588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 297 - 456
Target Start/End: Original strand, 18747729 - 18747886
Alignment:
Q  297 tagtaataccttgaaatcactctattttagtagtgatcatagatgaaattgttattaattattatccactacacaaaaatgaaggctatttgggcataaa 396  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18747729 tagtaataccttgaaatcactgtattttagtagtgatcatagatgaaattgttattaattattatccactacacaaaaatgaaggctatttgggcataaa 18747828  T
Q  397 gtggacactatcatccaactgaacagaacttcaaagagtttttaagctttcttggagagt 456  Q
    |||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  18747829 gtggacactatcattcaactgaacagaacttc--agagtttttaagctttcttggagagt 18747886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 335 - 463
Target Start/End: Complemental strand, 52367822 - 52367694
Alignment:
Q  335 atagatgaaattgttattaattattatccactacacaaaaatgaaggctatttgggcataaagtggacactatcatccaactgaacagaacttcaaagag 434  Q
    |||| |||| |||||||||||||| |||||||||| ||||||| ||||||||||| |||| ||||||||||| |||||||| ||| |||||||||||||     
T  52367822 atagctgaagttgttattaattatcatccactacataaaaatgcaggctatttggccatacagtggacactaccatccaacagaagagaacttcaaagaa 52367723  T
Q  435 tttttaagctttcttggagagtacaatgt 463  Q
    ||| ||||||||||||||||| |||||||    
T  52367722 tttataagctttcttggagagcacaatgt 52367694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 133 - 274
Target Start/End: Complemental strand, 30231180 - 30231040
Alignment:
Q  133 tttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcagg 232  Q
    |||||||| ||||  |||||||| ||| | |||||||| ||||| ||||||||||| |||||||||||||||||| | | ||||||||||||  |||| |    
T  30231180 tttcaacagcaaacatgaatccaagtctaggtagttaaacacacaaaaaatcctaataagtaaaacaaaataaacccta-aaattgaaccaagcatcatg 30231082  T
Q  233 tacaagtttatgggaacatggttgatttgttgaagagaacac 274  Q
    ||||||||||||| |||||| ||||||||||||||| |||||    
T  30231081 tacaagtttatggtaacatgcttgatttgttgaagaaaacac 30231040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 18748671 - 18748751
Alignment:
Q  184 cctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcaggtacaagtttatgggaacatggttgatttgttgaa 266  Q
    ||||| |||||||||||||||||| | | ||||||||| || |||||||||||||||||||| |||||| | |||||||||||    
T  18748671 cctaataagtaaaacaaaataaacccta-aaattgaac-aagaatcaggtacaagtttatggtaacatgctagatttgttgaa 18748751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 18748626 - 18748670
Alignment:
Q  163 gtagttaagcacactaaaaatcctaacaagtaaaacaaaataaac 207  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  18748626 gtagttaagcacactaaaaaccctaataagtaaaacaaaataaac 18748670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 129 - 308
Target Start/End: Complemental strand, 6988 - 6810
Alignment:
Q  129 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 228  Q
    ||||||||||||| |||  |||||||||||| | || || ||| || ||||||| ||||| |||||||||||||||||| | | |||||||||||| |||    
T  6988 tatatttcaacaataaacatgaatccaggtctaggtggtaaaggacgctaaaaaccctaataagtaaaacaaaataaacccta-aaattgaaccaagaat 6890  T
Q  229 caggtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaatacctt 308  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| || ||||||||||    
T  6889 caggtacaagtttatgggaacatggttgatttattgaagagaacacatattataatatagagagtgaatggtaatacctt 6810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 332 - 455
Target Start/End: Complemental strand, 24252877 - 24252754
Alignment:
Q  332 atcatagatgaaattgttattaattattatccactacacaaaaatgaaggctatttgggcataaagtggacactatcatccaactgaacagaacttcaaa 431  Q
    ||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||    
T  24252877 atcatagctaaagttgttattaattattatccactacacaaaaatgaaggctatttggccataaagtggatactatcatccaattgaagagaacttcaaa 24252778  T
Q  432 gagtttttaagctttcttggagag 455  Q
    ||||||||||||||||||||||||    
T  24252777 gagtttttaagctttcttggagag 24252754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 14330989 - 14330807
Alignment:
Q  129 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 228  Q
    |||||||||||| ||||  |||||||||||| | |||||||||||||||||||| ||||| || ||||| ||||||||| |  |||||||||| || |||    
T  14330989 tatatttcaacatcaaacatgaatccaggtctaggtagttaagcacactaaaaaccctaagaaataaaaaaaaataaaccct-gaaattgaacaaagaat 14330891  T
Q  229 caggtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaataccttgaaa 312  Q
    |||  ||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||| || ||||||||||||||    
T  14330890 cagtcacaagtttatgggaacatggttgatttgttgacaagaacacatattataatatagagagtgaatggtaataccttgaaa 14330807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 24251645 - 24251537
Alignment:
Q  163 gtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcaggtacaagtttatgggaacatggttgatttgt 262  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| | | |||||||| ||| || ||||||||||||||||| |||||| |||||||||    
T  24251645 gtagttaagcacactaaaaaccctaataagtaaaacaaaataaacccta-aaattgaa-caagaaccaggtacaagtttatggtaacatgcttgatttgt 24251548  T
Q  263 tgaagagaaca 273  Q
    |||||| ||||    
T  24251547 tgaagaaaaca 24251537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 21724461 - 21724279
Alignment:
Q  129 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 228  Q
    |||||||||||| ||||  |||||||||||| | |||||||||||||||||||| ||||| || ||||||||||||||| |  |||||||||| || |||    
T  21724461 tatatttcaacatcaaacatgaatccaggtctaggtagttaagcacactaaaaaccctaataaataaaacaaaataaaccct-gaaattgaacaaagaat 21724363  T
Q  229 caggtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaataccttgaaa 312  Q
    |||| ||||||||||||| ||||||||||||||||||  |||||||| ||||||||| |||||||| || ||||||||||||||    
T  21724362 caggcacaagtttatgggtacatggttgatttgttgacaagaacacatattataatatagagagtgaatggtaataccttgaaa 21724279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 129 - 312
Target Start/End: Complemental strand, 21804197 - 21804015
Alignment:
Q  129 tatatttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaat 228  Q
    |||||||||||| ||||  |||||||||||| | |||||||||||||||||||| ||||| || ||||||||||||||| |  |||||||||| || |||    
T  21804197 tatatttcaacatcaaacatgaatccaggtctaggtagttaagcacactaaaaaccctaataaataaaacaaaataaaccct-gaaattgaacaaagaat 21804099  T
Q  229 caggtacaagtttatgggaacatggttgatttgttgaagagaacacacattataatagagagagtggatagtaataccttgaaa 312  Q
    |||| ||||||||||||| ||||||||||||||||||  |||||||| ||||||||| |||||||| || ||||||||||||||    
T  21804098 caggcacaagtttatgggtacatggttgatttgttgacaagaacacatattataatatagagagtgaatggtaataccttgaaa 21804015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 332 - 455
Target Start/End: Complemental strand, 23248041 - 23247918
Alignment:
Q  332 atcatagatgaaattgttattaattattatccactacacaaaaatgaaggctatttgggcataaagtggacactatcatccaactgaacagaacttcaaa 431  Q
    ||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||    
T  23248041 atcatagcttaagttgttattaattattatccactacacaaaaatgaaggctatttggccataaagtggatactatcatccaacttaagagaacttcaaa 23247942  T
Q  432 gagtttttaagctttcttggagag 455  Q
    ||||||||||||||||||||||||    
T  23247941 gagtttttaagctttcttggagag 23247918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 133 - 274
Target Start/End: Complemental strand, 23246840 - 23246701
Alignment:
Q  133 tttcaacaacaaaggtgaatccaggtccatgtagttaagcacactaaaaatcctaacaagtaaaacaaaataaacacaagaaattgaaccaaaaatcagg 232  Q
    |||||||| ||||  |||||| | ||| | |||||||||||||||||||| ||||| |||||||||||||||||| | | |||||||| ||| |||||||    
T  23246840 tttcaacatcaaacatgaatctatgtctaggtagttaagcacactaaaaaccctaataagtaaaacaaaataaacccta-aaattgaa-caagaatcagg 23246743  T
Q  233 tacaagtttatgggaacatggttgatttgttgaagagaacac 274  Q
    ||||||||||||| |||||| ||||||||||||||| |||||    
T  23246742 tacaagtttatggtaacatgcttgatttgttgaagaaaacac 23246701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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