View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_10 (Length: 333)
Name: NF10489_low_10
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 5650214 - 5650521
Alignment:
| Q |
14 |
ataatgatacccttgttactcattcaacacaattactaaatttatatttatgaaaaaa-tatgattttttcttaggataattaattttgtgtgttgctaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |||| |
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| T |
5650214 |
ataatgatacccttgttactcattcaacacaattactaaatttatatttatgaaaaaaatatgaatttttcttaggataatta-ttttgtgtgttactaa |
5650312 |
T |
|
| Q |
113 |
aatattttaacaaaaaacataattaaaggacaattttaaaagcttagatgcattattaacaaatttattgtattaccaatatttttctaaccctatggta |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
5650313 |
aatattttaacaaaaaacataattaaaggacaattttaaaagcttagatgcattattaacaaatttattgaattaccaatatttttctaa-cctatggta |
5650411 |
T |
|
| Q |
213 |
attaggatatttgaccctcaatggtgtccaaagtctttccatgactaagactctctggattcgctattagacttactttcaagttggtatcaatatattt |
312 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5650412 |
attagaatatttgaccctcaatggtgtccaaagtctttccatgactaagattctctgggttcgctattagacttactttcgagttggtatcaatatattt |
5650511 |
T |
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| Q |
313 |
catctttctt |
322 |
Q |
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||||||||| |
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| T |
5650512 |
gatctttctt |
5650521 |
T |
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