View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_11 (Length: 333)
Name: NF10489_low_11
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 94 - 317
Target Start/End: Original strand, 2560274 - 2560497
Alignment:
| Q |
94 |
cagttatgaaatgttatataagaacactataaactgtacattcatccaatgcagcaattgaaacattttttagaaactaattttgaatctatgtagataa |
193 |
Q |
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| T |
2560274 |
cagttatgaaatgttatataagaacactataaactgtacattcatccaatgcagcaattgaaacattttttagaaactaattttgaatctatgtagataa |
2560373 |
T |
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| Q |
194 |
agtctcaaaattacacaatcaattaatccccgattaatatttaatgaagcttaagatggtaatttagtaatataatgataatggtgaattgaaagtgtaa |
293 |
Q |
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| T |
2560374 |
agtctcaaaattacacaatcaatcaatcccagattaatatttaatgaagcttaagatggtaatttagtaatataatgataatggtgaattgaaagtgtaa |
2560473 |
T |
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| Q |
294 |
aacaatgcatatgaattatatatg |
317 |
Q |
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|||||||||||||||||||||||| |
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| T |
2560474 |
aacaatgcatatgaattatatatg |
2560497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 2560155 - 2560198
Alignment:
| Q |
12 |
agaagaagaaaataatctaactaataactaataacatttgttat |
55 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2560155 |
agaagaagaaaataatctaactaataactaataacatttgttat |
2560198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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