View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_12 (Length: 331)
Name: NF10489_low_12
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 42055251 - 42055556
Alignment:
| Q |
13 |
agatggatgaattgctattgatctttattttttaggtaaccatgtcaactagctagatctaaggaatccttgtatgcttcgttgcaattaagcttaatcc |
112 |
Q |
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|||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42055251 |
agatgggtgaattgccattgatctttattttttcggtaaccatgtcaactagttagatctaaggaatccttgtatgcttcgttgcaattaagcttaatcc |
42055350 |
T |
|
| Q |
113 |
atccctcctaagatcttttccaaccaataaaaatattttcgtattgatgagttttcaaaggatgatgggtgtagttctcaatgacttgaaccattttgag |
212 |
Q |
| |
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||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42055351 |
atccctcctaagatctttttcaacaaataaaaatagtttcgtattgatgagttttcaaaggatgatgggtgtagttctcaatgacttgaaccattttgag |
42055450 |
T |
|
| Q |
213 |
aatagttaaaaatg-aattactcggacaagcaaaaatcatcctgaaaaatagttttgttcctctacatttacatgtgcccgcaagccaccaaacaaatga |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42055451 |
aatagttaaaaatgaaattactcggacaagcaaaaatcatccagaaaaatagttttgttcctctacatttacatgtgcccgcaagccaccaaacaaatga |
42055550 |
T |
|
| Q |
312 |
taaccc |
317 |
Q |
| |
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|||||| |
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| T |
42055551 |
taaccc |
42055556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 42055076 - 42055184
Alignment:
| Q |
13 |
agatggatgaattgctattgatctttattttttaggtaaccatgtcaactagctagatctaaggaatccttgtatgcttcgttgcaattaagcttaatcc |
112 |
Q |
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|||||| |||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42055076 |
agatgggtgaattgccattgatctttattttttcggtaaccatgtcaactagttagatctaaggaatccttgtatgcttcgttgcaattaagcttaatcc |
42055175 |
T |
|
| Q |
113 |
atccctcct |
121 |
Q |
| |
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||||||||| |
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| T |
42055176 |
atccctcct |
42055184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 25662370 - 25662217
Alignment:
| Q |
64 |
gctagatctaaggaatccttgtatgcttcgttgcaattaagcttaatccatccctcctaagatcttttccaaccaataaaaatattttcgtattgatgag |
163 |
Q |
| |
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|||||| | ||||| |||||||||||||| | |||||||||||| | | || |||| |||||||| |||||||||||||||| | |||| ||| |||| |
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| T |
25662370 |
gctagacccaaggattccttgtatgcttcatcacaattaagcttagcctacccgtcctgagatctttaccaaccaataaaaatagtatcgtgttggtgag |
25662271 |
T |
|
| Q |
164 |
ttttcaaaggatgatgggtgtagttctcaatgacttgaaccattttgagaatag |
217 |
Q |
| |
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|||||| |||||| |||| |||||| |||||| ||| |||||||||| |||||| |
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|
| T |
25662270 |
ttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatag |
25662217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 25668775 - 25668622
Alignment:
| Q |
64 |
gctagatctaaggaatccttgtatgcttcgttgcaattaagcttaatccatccctcctaagatcttttccaaccaataaaaatattttcgtattgatgag |
163 |
Q |
| |
|
|||||| | ||||| |||||||||||||| | |||||||||||| | | || |||| |||||||| |||||||||||||||| | |||| ||| |||| |
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| T |
25668775 |
gctagacccaaggattccttgtatgcttcatcacaattaagcttagcctacccgtcctgagatctttaccaaccaataaaaatagtatcgtgttggtgag |
25668676 |
T |
|
| Q |
164 |
ttttcaaaggatgatgggtgtagttctcaatgacttgaaccattttgagaatag |
217 |
Q |
| |
|
|||||| |||||| |||| |||||| |||||| ||| |||||||||| |||||| |
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|
| T |
25668675 |
ttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatag |
25668622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 25675180 - 25675027
Alignment:
| Q |
64 |
gctagatctaaggaatccttgtatgcttcgttgcaattaagcttaatccatccctcctaagatcttttccaaccaataaaaatattttcgtattgatgag |
163 |
Q |
| |
|
|||||| | ||||| |||||||||||||| | |||||||||||| | | || |||| |||||||| |||||||||||||||| | |||| ||| |||| |
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|
| T |
25675180 |
gctagacccaaggattccttgtatgcttcatcacaattaagcttagcctacccgtcctgagatctttaccaaccaataaaaatagtatcgtgttggtgag |
25675081 |
T |
|
| Q |
164 |
ttttcaaaggatgatgggtgtagttctcaatgacttgaaccattttgagaatag |
217 |
Q |
| |
|
|||||| |||||| |||| |||||| |||||| ||| |||||||||| |||||| |
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| T |
25675080 |
ttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatag |
25675027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 25681854 - 25681701
Alignment:
| Q |
64 |
gctagatctaaggaatccttgtatgcttcgttgcaattaagcttaatccatccctcctaagatcttttccaaccaataaaaatattttcgtattgatgag |
163 |
Q |
| |
|
|||||| | ||||| |||||||||||||| | |||||||||||| | | || |||| |||||||| |||||||||||||||| | |||| ||| |||| |
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|
| T |
25681854 |
gctagacccaaggattccttgtatgcttcatcacaattaagcttagcctacccgtcctgagatctttaccaaccaataaaaatagtatcgtgttggtgag |
25681755 |
T |
|
| Q |
164 |
ttttcaaaggatgatgggtgtagttctcaatgacttgaaccattttgagaatag |
217 |
Q |
| |
|
|||||| |||||| |||| |||||| |||||| ||| |||||||||| |||||| |
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|
| T |
25681754 |
ttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatag |
25681701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 25690158 - 25690005
Alignment:
| Q |
64 |
gctagatctaaggaatccttgtatgcttcgttgcaattaagcttaatccatccctcctaagatcttttccaaccaataaaaatattttcgtattgatgag |
163 |
Q |
| |
|
|||||| | ||||| |||||||||||||| | |||||||||||| | | || |||| |||||||| |||||||||||||||| | |||| ||| |||| |
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| T |
25690158 |
gctagacccaaggattccttgtatgcttcatcacaattaagcttagcctacccgtcctgagatctttaccaaccaataaaaatagtatcgtgttggtgag |
25690059 |
T |
|
| Q |
164 |
ttttcaaaggatgatgggtgtagttctcaatgacttgaaccattttgagaatag |
217 |
Q |
| |
|
|||||| |||||| |||| |||||| |||||| ||| |||||||||| |||||| |
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|
| T |
25690058 |
ttttcacaggatggtgggagtagttatcaatgtcttcaaccattttgggaatag |
25690005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 217
Target Start/End: Complemental strand, 29223678 - 29223519
Alignment:
| Q |
58 |
caactagctagatctaaggaatccttgtatgcttcgttgcaattaagcttaatccatccctcctaagatcttttccaaccaataaaaatattttcgtatt |
157 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||| ||| ||||||||||||||||| || ||| || | ||||||| |||||||||||| | |||| || |
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|
| T |
29223678 |
caaccagctagacccaaggaatccttgtatgctccgtcacaattaagcttaatccacccatcccgaggtattttccagccaataaaaatagtgtcgtttt |
29223579 |
T |
|
| Q |
158 |
gatgagttttcaaaggatgatgggtgtagttctcaatgacttgaaccattttgagaatag |
217 |
Q |
| |
|
|||||||| |||||||| | || |||||| || ||| ||| ||||||||||||||||| |
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|
| T |
29223578 |
tgtgagtttttaaaggatggttggagtagttgtctatgtcttcaaccattttgagaatag |
29223519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 176
Target Start/End: Complemental strand, 38557315 - 38557196
Alignment:
| Q |
58 |
caactagctagatctaaggaatccttgtatgcttcgttgcaattaagcttaatccatcc-ctcctaagatcttttccaaccaataaaaatattttcgtat |
156 |
Q |
| |
|
|||||| ||||||| |||||||| || |||||| || |||||||| ||||| ||| || || || || |||| | || |||||||||||| | |||||| |
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| T |
38557315 |
caactaactagatccaaggaatcattatatgctctgtcgcaattaatcttaacccaccctcttctgaggtcttcttcagccaataaaaatagtgtcgtat |
38557216 |
T |
|
| Q |
157 |
tgatgagttttcaaaggatg |
176 |
Q |
| |
|
|| ||| ||||||||||||| |
|
|
| T |
38557215 |
tggtgatttttcaaaggatg |
38557196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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