View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_13 (Length: 298)
Name: NF10489_low_13
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 33041874 - 33042153
Alignment:
| Q |
1 |
gatgaatatctttgtctacagatgctcaaacattataaattctttggcattgttagttctaagattttgatcactttaccaaattgaattttaaccagtg |
100 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041874 |
gatgaatatctttgtctacaaatgctcaatcattataaattctttggcattgttagttctaagattttgatcactttaccaaattgaattttaaccagtg |
33041973 |
T |
|
| Q |
101 |
caaaatgttattgtattttagtaggtgtttctcatttgcgagcaatcaagtaaattaaagtgaaccaactaaaatcgttcacaattgttagaaaataaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33041974 |
caaaatgttattgtattttagtaggtgtttctcatttgcgagtaatcaagtaaattaaagtgaaccaactaaaatcattcacaattgttagaaaataaat |
33042073 |
T |
|
| Q |
201 |
aagattttccatcgtaagtagatttataactatcatagagggaaaaattgcaagtaatgaatgatgtggaacctaagtaa |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33042074 |
aagattttccatcgtaagtagatttataactatcatagagggaaaaattgcaagtaatgaatgaagtggaacctaagtaa |
33042153 |
T |
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