View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_16 (Length: 275)
Name: NF10489_low_16
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 11663869 - 11664116
Alignment:
| Q |
18 |
tgtttctgataacaacctccacatcaatgctcatttcatcggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatccattgttattctc |
117 |
Q |
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| T |
11663869 |
tgtttctgataacaacctccacatcaatgctcatttcataggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatccattgttattctc |
11663968 |
T |
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| Q |
118 |
tttgacaatcaccaacttttccttggtgcccaaaaaacatcaacatgggatgattctgtagaccgtcttgccctctcctttgacggcgaacccatcactc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
11663969 |
tttgacaatcaccaacttttccttggtgcccaaaaaacatcaacatgggatgattctgtagaccgtcttgccctctcctttgacggtgagcccatcactc |
11664068 |
T |
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| Q |
218 |
tcaacgaatcagaaggtgcgaaatgggaatcatctggcgtatcctttg |
265 |
Q |
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| T |
11664069 |
tcaacgaatcagaaggtgcgaaatgggaatcatctggggtatcctttg |
11664116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 11669180 - 11669427
Alignment:
| Q |
18 |
tgtttctgataacaacctccacatcaatgctcatttcatcggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatccattgttattctc |
117 |
Q |
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||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11669180 |
tgtttctgacaaaaacctacacatcaatgctcatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctc |
11669279 |
T |
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| Q |
118 |
tttgacaatcaccaacttttccttggtgcccaaaaaacatcaacatgggatgattctgtagaccgtcttgccctctcctttgacggcgaacccatcactc |
217 |
Q |
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| T |
11669280 |
tttgacaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgtggatcgccttgccatctcctttgacggagaacccatcaccc |
11669379 |
T |
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| Q |
218 |
tcaacgaatcagaaggtgcgaaatgggaatcatctggcgtatcctttg |
265 |
Q |
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|| ||||||| ||||||||||||||||||||||| ||||| ||||||| |
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| T |
11669380 |
tccacgaatctgaaggtgcgaaatgggaatcatccggcgtgtcctttg |
11669427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 7344627 - 7344397
Alignment:
| Q |
18 |
tgtttctgataacaacctccacatcaatgctcatttcatcggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatccattgttattctc |
117 |
Q |
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|||||| ||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7344627 |
tgtttccgataacaacctccacataaacgctcacttcattggtagaagaaacaagaacatgaaaagagacttcacatgggtacaatccattgttattctc |
7344528 |
T |
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| Q |
118 |
tttgacaatcaccaacttttccttggtgcccaaaaaacatcaacatgggatgattctgtagaccgtcttgccctctcctttgacggcgaacccatcactc |
217 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| | |
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| T |
7344527 |
tttgacaatcaccaacttttccttggtgccaaaaaaacatcaacatgggatgattctgtagaccgccttgccctctcttttgacggtgaacccatcaccc |
7344428 |
T |
|
| Q |
218 |
tcaacgaatcagaaggtgcgaaatgggaatc |
248 |
Q |
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|| ||||||||||||| ||||||||||||| |
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| T |
7344427 |
tccacgaatcagaaggaacgaaatgggaatc |
7344397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 11655412 - 11655659
Alignment:
| Q |
18 |
tgtttctgataacaacctccacatcaatgctcatttcatcggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatccattgttattctc |
117 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11655412 |
tgtttctgacaaaaacctacacatcaatgctcatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctc |
11655511 |
T |
|
| Q |
118 |
tttgacaatcaccaacttttccttggtgcccaaaaaacatcaacatgggatgattctgtagaccgtcttgccctctcctttgacggcgaacccatcactc |
217 |
Q |
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||||||||||||||||| |||||||||||||| |||||| | ||||||||||| ||||| || || |||||| |||| |||||||| ||||||||||| | |
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| T |
11655512 |
tttgacaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgtggatcgccttgccatctcatttgacggagaacccatcaccc |
11655611 |
T |
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| Q |
218 |
tcaacgaatcagaaggtgcgaaatgggaatcatctggcgtatcctttg |
265 |
Q |
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|| ||||||| ||||||||||||||||||||||| ||||| ||||||| |
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| T |
11655612 |
tccacgaatctgaaggtgcgaaatgggaatcatccggcgtgtcctttg |
11655659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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