View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_17 (Length: 275)
Name: NF10489_low_17
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_17 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 39777153 - 39777415
Alignment:
| Q |
1 |
caacctttattccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttactttgtgccact |
100 |
Q |
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| T |
39777153 |
caacctttattccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttagtttgtgccact |
39777252 |
T |
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| Q |
101 |
agcatcatatatatactctatattaaagagagaagatggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatcgttctt |
200 |
Q |
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| T |
39777253 |
agcatcatatatatactct-tataaaagagagaagagggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatcgttctt |
39777351 |
T |
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| Q |
201 |
ctaccataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttc |
264 |
Q |
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| T |
39777352 |
ctaccataattttgggcattgttattgaagctccatcgtgttcagacctcgagtgcataggttc |
39777415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 32743946 - 32743840
Alignment:
| Q |
11 |
tccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttactttgtgccactagcatcatat |
110 |
Q |
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||||| ||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| | ||| || |
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| T |
32743946 |
tccattagttttcattgccattaatattttttatgttgctaagaaatgttgcaacggaaagatagagccattcattttgtttgtgccactgacgtcacat |
32743847 |
T |
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| Q |
111 |
atatact |
117 |
Q |
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| T |
32743846 |
atatact |
32743840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 32743791 - 32743707
Alignment:
| Q |
155 |
agctcatcatgctttctattaagctctcatcttttctatcgttcttctaccataattttgggcattgttagtgaagctccatcgtgtt |
242 |
Q |
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| T |
32743791 |
agctgatcatgctttctattaagctctcttcttctttcttgttctttga---taattttgggtattgtttgtgaagctccatcgtgtt |
32743707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 1094573 - 1094531
Alignment:
| Q |
216 |
gcattgttagtgaagctccatcgtgttcagacctcgagtgcac |
258 |
Q |
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| T |
1094573 |
gcattgtttgtgaagctccatcgtgttcaggcctcgagtgcac |
1094531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 3364 - 3307
Alignment:
| Q |
206 |
ataattttgggcattgttagtgaagctccatcgtgttcagacctcgagtgcacaggttc |
264 |
Q |
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| T |
3364 |
ataattttggacattatttgtgaagctccatcgtgtt-tgacctcgagtgcacgggttc |
3307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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