View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10489_low_19 (Length: 266)

Name: NF10489_low_19
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10489_low_19
NF10489_low_19
[»] chr4 (11 HSPs)
chr4 (6-252)||(23408382-23408628)
chr4 (1-91)||(23415712-23415802)
chr4 (1-90)||(23453376-23453465)
chr4 (1-90)||(23868917-23869006)
chr4 (1-90)||(23886012-23886101)
chr4 (1-90)||(24307408-24307497)
chr4 (1-90)||(23402259-23402348)
chr4 (6-90)||(26434214-26434298)
chr4 (6-90)||(26832925-26833009)
chr4 (6-90)||(26435994-26436078)
chr4 (12-90)||(34662045-34662123)
[»] chr1 (3 HSPs)
chr1 (1-79)||(33216630-33216708)
chr1 (12-90)||(45576399-45576477)
chr1 (15-67)||(29391665-29391717)
[»] chr7 (2 HSPs)
chr7 (6-88)||(47317472-47317554)
chr7 (15-67)||(40180297-40180349)
[»] chr2 (1 HSPs)
chr2 (1-52)||(14715434-14715485)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 23408628 - 23408382
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtt 105  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  23408628 gtcagacttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtt 23408529  T
Q  106 tattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacttga 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23408528 tattggtttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacatga 23408429  T
Q  206 aaattgcttgtagaattgggtttctctctgttttgaatgattgatct 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23408428 aaattgcttgtagaattgggtttctctctgttttgaatgattgatct 23408382  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 23415802 - 23415712
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  23415802 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac 23415712  T

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Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 23453465 - 23453376
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  23453465 ctgcagtcagtcttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga 23453376  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 23868917 - 23869006
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || |||||||    
T  23868917 ctgctgtcagacttgttcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 23869006  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 23886012 - 23886101
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || |||||||    
T  23886012 ctgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 23886101  T

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Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24307408 - 24307497
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || |||||||    
T  24307408 ctgctgtcagacttgttcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga 24307497  T

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Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 23402259 - 23402348
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || |||||||    
T  23402259 ctgcagtcaggcttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga 23402348  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 26434214 - 26434298
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26434214 gtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26434298  T

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Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 26832925 - 26833009
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26832925 gtcaggcttgttctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26833009  T

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Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 26435994 - 26436078
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    ||||| |||||||| || ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26435994 gtcaggcttgttctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga 26436078  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 34662123 - 34662045
Alignment:
Q  12 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    |||||||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| |||||||    
T  34662123 cttgttcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga 34662045  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 33216630 - 33216708
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttac 79  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||    
T  33216630 ctgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggctgtgaccaagtttac 33216708  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
Q  12 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 90  Q
    |||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || |||||||||||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga 45576477  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 29391665 - 29391717
Alignment:
Q  15 gttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 67  Q
    |||||||| ||||||||||| || ||||||||||| ||||| |||||||||||    
T  29391665 gttcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 47317472 - 47317554
Alignment:
Q  6 gtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctta 88  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| |||||||| |||||||| || |||||    
T  47317472 gtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttactagttctta 47317554  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 40180349 - 40180297
Alignment:
Q  15 gttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 67  Q
    ||||||||||| |||||||| || ||||||||||||||||| || ||||||||    
T  40180349 gttcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt 40180297  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14715434 - 14715485
Alignment:
Q  1 ctgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga 52  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||| |||||    
T  14715434 ctgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga 14715485  T

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