View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10489_low_2 (Length: 402)

Name: NF10489_low_2
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10489_low_2
NF10489_low_2
[»] chr6 (1 HSPs)
chr6 (21-395)||(6723152-6723526)
[»] chr3 (7 HSPs)
chr3 (21-146)||(48025193-48025316)
chr3 (21-146)||(48024082-48024205)
chr3 (21-146)||(48024633-48024756)
chr3 (21-146)||(48027373-48027496)
chr3 (22-101)||(28784499-28784578)
chr3 (22-101)||(48707774-48707859)
chr3 (24-56)||(5907771-5907803)
[»] chr7 (2 HSPs)
chr7 (21-146)||(13108905-13109029)
chr7 (21-146)||(13111198-13111321)
[»] chr2 (4 HSPs)
chr2 (21-98)||(14662316-14662393)
chr2 (22-101)||(45338557-45338636)
chr2 (22-101)||(45336245-45336324)
chr2 (21-96)||(17648861-17648934)
[»] chr5 (2 HSPs)
chr5 (22-101)||(32797992-32798071)
chr5 (22-101)||(32800304-32800383)
[»] chr8 (2 HSPs)
chr8 (22-101)||(44731827-44731906)
chr8 (22-101)||(44734138-44734217)
[»] chr1 (2 HSPs)
chr1 (22-101)||(9535241-9535320)
chr1 (22-101)||(1550142-1550221)
[»] chr4 (2 HSPs)
chr4 (19-96)||(7231043-7231118)
chr4 (21-101)||(22804595-22804675)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 395
Target Start/End: Complemental strand, 6723526 - 6723152
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6723526 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaagcaacactttaattatgacagaaaacaacagtagataataatgaacaaa 6723427  T
Q  121 aacagcaaaaatatcaatctccaacagatattacactccattaaatgttgagnnnnnnnttggataaaattttgcttaatgactttcaagaccattaatc 220  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  6723426 aatagcaaaaatatcaatctccaacagatattacactccattaaatgttgagaaaaagattggataaaattttgcttaatgactttcaagaccattaatc 6723327  T
Q  221 taactatgtttaactccataattgaaatataaataatctccatatcaaaacttaagcagattacacatctcgctagctgagtccttttgcatacatgaaa 320  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||    
T  6723326 taactatgtttaactccataagtgaaatacaaataatctccatatcaaaacttaagcagattatacatctcgctagctgagaacttttgcatacatgaaa 6723227  T
Q  321 agaattaatcataaacaacacattttctttaggcaagactggtctatttttaacaaccaatattccttcatctca 395  Q
     ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6723226 ggaattaatcataaacaatacattttctttaggcaagcctggtctatttttaacaaccaatattccttcatctca 6723152  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 48025193 - 48025316
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaa 120  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||||||||||||||||||||||| ||||||| |||||| ||| ||    
T  48025193 tttacttactaaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaac-aa 48025291  T
Q  121 aacagcaaaaatatcaatctccaaca 146  Q
    ||||| ||||||||||||||||||||    
T  48025292 aacag-aaaaatatcaatctccaaca 48025316  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 48024082 - 48024205
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||  ||||||||||||||||||||||||| ||||||| |||||| ||| ||    
T  48024082 tttacttactaaataagcaacaatctaattatgacacttatacataaacaagtaacactttaattatgacagaaaacagcagtagaaaataattaac-aa 48024180  T
Q  121 aacagcaaaaatatcaatctccaaca 146  Q
    || || ||||||||||||||||||||    
T  48024181 aagag-aaaaatatcaatctccaaca 48024205  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 48024633 - 48024756
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||  ||||| |||||||||||||||||||| ||||||| |||||| ||| ||    
T  48024633 tttacttactaaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaacagcagtagaaaataattaac-aa 48024731  T
Q  121 aacagcaaaaatatcaatctccaaca 146  Q
    ||||  ||||||||||||||||||||    
T  48024732 aaca-taaaaatatcaatctccaaca 48024756  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 48027373 - 48027496
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| ||||||| ||||||||  ||||| | |||||| ||| ||    
T  48027373 tttacttactaaataagcaacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaacggcagtaaaaaataattaac-aa 48027471  T
Q  121 aacagcaaaaatatcaatctccaaca 146  Q
    ||||| ||||||||||||||||||||    
T  48027472 aacag-aaaaatatcaatctccaaca 48027496  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 28784578 - 28784499
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| |||||||||||||||||| ||| ||||||| |||||||||| |||||| |||||||||| |||||| ||||    
T  28784578 ttacttaccaaataagcaacaatctaactataacacttaaacttaaacaagcaacacattaattatgagagaaaataaca 28784499  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 48707774 - 48707859
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgac------acttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| |||||| ||||||||||| ||||||      ||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  48707774 ttacttaccaaataaacaacaatctaactatgacacttaaacttaaacttaaacaagcaacacattaattatgacagaaaataaca 48707859  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 5907803 - 5907771
Alignment:
Q  24 acttactaaataagcaacaatctaattatgaca 56  Q
    |||| ||||||||||||||||||||||||||||    
T  5907803 acttgctaaataagcaacaatctaattatgaca 5907771  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 13108905 - 13109029
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaa 120  Q
    |||||||||||||||||||||||||||||||||||||||| |  ||||||| ||||||||||||||||||||||||||||| | || |||||| ||| ||    
T  13108905 tttacttactaaataagcaacaatctaattatgacacttataaataaacaagcaacactttaattatgacagaaaacaacaatggaaaataattaac-aa 13109003  T
Q  121 aacagcaaaaatatcaatctccaaca 146  Q
    ||||  ||||||||||||||||||||    
T  13109004 aacaaaaaaaatatcaatctccaaca 13109029  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 13111198 - 13111321
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaacagtagataataatgaacaaa 120  Q
    ||||||||||||||||||||||||||||||||| |||||  || ||||||| |||||||||||||||||||||||||| ||||| | | |||| ||| ||    
T  13111198 tttacttactaaataagcaacaatctaattatggcacttctacataaacaagcaacactttaattatgacagaaaacagcagtaaaaagtaattaac-aa 13111296  T
Q  121 aacagcaaaaatatcaatctccaaca 146  Q
    ||||| ||||||||||||||||||||    
T  13111297 aacag-aaaaatatcaatctccaaca 13111321  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 14662393 - 14662316
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaaca 98  Q
    ||||||||||||||||||||| |||||||||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  14662393 tttacttactaaataagcaacgatctaattatgacacttatacataaacaagcaacactttaattatgacagaaaaca 14662316  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 45338636 - 45338557
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  45338636 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 45338557  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 45336324 - 45336245
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||| |||| |||||| ||||||||||||||||| ||||    
T  45336324 ttacttaccaaataagcaacaatctaaatatgacacttaaacttacacaagcaacacattaattatgacagaaaataaca 45336245  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 17648934 - 17648861
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaa 96  Q
    ||||| |||| ||||||||||||||||||||||||| ||| |||||||||| |||||   ||||||||||||||||    
T  17648934 tttacatacttaataagcaacaatctaattatgaca-tta-acttaaacaagcaacaagctaattatgacagaaaa 17648861  T

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Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 32798071 - 32797992
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  32798071 ttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 32797992  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 32800383 - 32800304
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  32800383 ttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 32800304  T

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Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 44731906 - 44731827
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  44731906 ttacttaccaaataagcaacaatctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 44731827  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 44734217 - 44734138
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| ||||||||||||| |||| ||||||||||| |||||||||| |||||| ||||||||||||||||| ||||    
T  44734217 ttacttaccaaataagcaacaacctaactatgacacttaaacttaaacaagcaacacattaattatgacagaaaataaca 44734138  T

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Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 9535320 - 9535241
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||| |||||||||| ||||    
T  9535320 ttacttaccaaataagcaacaatctaattatgacacttaaacttaaacaagcaacacattaattttgacagaaaataaca 9535241  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 1550221 - 1550142
Alignment:
Q  22 ttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||| |||| ||||    
T  1550221 ttacttaccaaataagcaacaatctaactatgacacttaaacttatacaagcaacacattaattatgacataaaataaca 1550142  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 7231043 - 7231118
Alignment:
Q  19 actttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaa 96  Q
    ||||||||||||||||||||| ||||||||||||||||||   |||||||||| ||||| | ||||||||||||||||    
T  7231043 actttacttactaaataagcagcaatctaattatgacact--aacttaaacaagcaacaatctaattatgacagaaaa 7231118  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 22804675 - 22804595
Alignment:
Q  21 tttacttactaaataagcaacaatctaattatgacacttacacttaaacaaacaacactttaattatgacagaaaacaaca 101  Q
    ||||||||| ||||||||| ||||||||||||| |||||| |||||||||| |||| | |||||||||| |||||| ||||    
T  22804675 tttacttaccaaataagcagcaatctaattatggcacttaaacttaaacaagcaacgcattaattatgagagaaaataaca 22804595  T

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