View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_20 (Length: 261)
Name: NF10489_low_20
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 10048742 - 10048836
Alignment:
| Q |
19 |
tctgttacttcgttgcgatttgaataagcatcttcgcgtttgttcgtttgaatacttttctgctagaagcatttaaaaatcagatacgattatga |
113 |
Q |
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| T |
10048742 |
tctgttacttcgttgcgatttgaataagcatcttcgtgtttgttcgtttgaatacttttctgctagaagcatttgaaaatcagatacgattatga |
10048836 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 10048892 - 10048970
Alignment:
| Q |
169 |
gaccgaagatgaaatgaaaaatctgcatcggatttgattttgaatatttgattctgattcggttagatgagtttctctg |
247 |
Q |
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| T |
10048892 |
gaccgaagatgaaatgaaaaatctgcatcggatttgattttgaatatttgattctgattcggttagatgagtttttctg |
10048970 |
T |
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