View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_27 (Length: 238)
Name: NF10489_low_27
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 37204204 - 37204031
Alignment:
| Q |
51 |
aaacaaaaacctctcttcaactttttctgcattcaacaacacaaccatgccaaggaggacagtaaggaatccgaaaaggaagaataggagtatttcacag |
150 |
Q |
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| T |
37204204 |
aaacacaaacctctcttcaactttttctgcattcaacaacacaaccatgccaaggaggacagtaaggaatccgaaaaggaagaataggagtatttcacag |
37204105 |
T |
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| Q |
151 |
tctgagtcaaccaaccttaacaaccaggttaacctttcatccaaatgcttcttttgtattgtgtatcagttttt |
224 |
Q |
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| T |
37204104 |
tctgagtcaaccaaccttaacaaccaggttaacctttcatccaaatgcttcttttgtattgtgtatcagttttt |
37204031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 37209979 - 37209920
Alignment:
| Q |
3 |
ttgtatcaaatgagtcaaaaataaaacattgtagcgtgtgagaaagagaaacaaaaacct |
62 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37209979 |
ttgtattaaatgactcaaaaataaaacattgtagcgtgtgagaaagagaaacaaaaacct |
37209920 |
T |
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