View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_4 (Length: 391)
Name: NF10489_low_4
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 44298885 - 44298532
Alignment:
| Q |
19 |
gttgtggctcaggttaatcaatttctttcgtattgttaataagatgatgttgttgttatattaattaatgtaagttgtgtggaattggattaaggttttg |
118 |
Q |
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| T |
44298885 |
gttgtggctcaggttaatcaatttctttcgtattgttaa----attttatcattgttatattaattaatgtaagttgtgtggaattggattaaggttttg |
44298790 |
T |
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| Q |
119 |
gagttaggaattgtggtgcactctgtagtgattggtttgtcattgggtgcttcagagaaccattgcaccataaggcctctcattgctgcactttgcttcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44298789 |
gagttaggaattgtggtgcactctgtagtgattggtttgtcattgggtgcttcagagaaccattgcaccataaggcctctcattgctgcactttgcttcc |
44298690 |
T |
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| Q |
219 |
atcaactctttgaaggaatgggtttgggtggttgcatacttcaggtaatgattattaattccatttaatttcattgaagaatttacaatatgagcaaatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44298689 |
atcaactctttgaaggaatgggtttgggtggttgcatacttcaggtaatgatt----attccatttaatttcattgaagaatttacaatatgagcaaatt |
44298594 |
T |
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| Q |
319 |
attccattaatgtgacaggctgattatggaacgaagatgaaatcgacaatgatattcttctt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44298593 |
attccattaatgtgacaggctgattatggaacgaagatgaaatcgacaatgatattcttctt |
44298532 |
T |
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