View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10489_low_6 (Length: 379)

Name: NF10489_low_6
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10489_low_6
NF10489_low_6
[»] chr4 (9 HSPs)
chr4 (108-374)||(36090730-36090995)
chr4 (1-105)||(36090589-36090693)
chr4 (108-302)||(36100159-36100347)
chr4 (104-294)||(21482164-21482345)
chr4 (3-92)||(34971901-34971990)
chr4 (1-88)||(36107659-36107746)
chr4 (207-268)||(34972138-34972199)
chr4 (1-65)||(21482414-21482478)
chr4 (108-160)||(36107554-36107606)
[»] chr2 (2 HSPs)
chr2 (115-302)||(8338046-8338224)
chr2 (13-92)||(8338280-8338359)
[»] chr6 (2 HSPs)
chr6 (1-92)||(6838416-6838507)
chr6 (108-164)||(6838311-6838367)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 108 - 374
Target Start/End: Original strand, 36090730 - 36090995
Alignment:
Q  108 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattccaagat 207  Q
    |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| |||||    
T  36090730 tgttttgaatctcttgtaatgtattttcatgttgaagatggttaagaatgaggtgttgttttgagtgtaaatgatgtcagaaacatgggaattcaaagat 36090829  T
Q  208 tgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagttgtcaagagnnnnn 307  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||         
T  36090830 tgagaataatgagaaaaacaagtgagaaaattttaaatgggagattgtgatgttgttgtagaaacagacaagacaactgttatagttgtcaagag-aaaa 36090928  T
Q  308 nncaaaatcctcatagtttacgtggtatagtaacaacgtggtttgtatttgatgtccatctcattgt 374  Q
      |||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||    
T  36090929 aacaaaatcctcatagtttacgtggtatagtaacaatgtggtttgtatttgttgtgcatctcattgt 36090995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 36090589 - 36090693
Alignment:
Q  1 acatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttgttacttttagcacatttaactgttacttggacatgggaactat 100  Q
    |||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36090589 acatttgataaaccttcgtaatcatgtccgccacttcgaattctgatctgaatgttgttacttttagcacatttaactgttacttggacatgggaactat 36090688  T
Q  101 ccttt 105  Q
    |||||    
T  36090689 ccttt 36090693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 302
Target Start/End: Complemental strand, 36100347 - 36100159
Alignment:
Q  108 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattccaagat 207  Q
    |||||| ||||||||||| ||||||||||| || ||||||||| ||||||||| ||| ||| ||| |||||| ||||||||       |||||  |||||    
T  36100347 tgttttaaatctcttgttatgtattttcatatttaggatggttgagaatgaggggttttttggaccgtaaataatgtcagat------gaattaaaagat 36100254  T
Q  208 tgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagttgtcaagag 302  Q
    |||||||||| | |||||||| |||||| |||||||||||| ||| |||||||||||||||||||||||| || ||||||||  |||||||||||    
T  36100253 tgagaataatgataaaaacaattgagaagattttgaatgggtgatagtgatgttgttgttgaaacagacatgaaaattgttaaggttgtcaagag 36100159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 104 - 294
Target Start/End: Complemental strand, 21482345 - 21482164
Alignment:
Q  104 ttgttgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattcca 203  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||| |||||||| | || ||| || |||||||||| ||||| | || ||||||| |    
T  21482345 ttgttgttttaaatctcttgttttgtattttcatgttgaggatggttgagaatgagatattgtttggagtgtaaatgatatcagagatagaggaattcaa 21482246  T
Q  204 agattgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagtt 294  Q
    ||||||         |||||| ||| ||||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||||||| ||||    
T  21482245 agattg---------agaaaagcaattgagaaaattttgaaagggtgattgtgatgttgttgttgaaatagacatgacaattgttaaagtt 21482164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 34971901 - 34971990
Alignment:
Q  3 atatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttgttacttttagcacatttaactgttacttggacatg 92  Q
    ||||||||||||||| ||||| || || |||||| ||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||    
T  34971901 atatgataaaccttcatagtcatgccctccacttcgaattcttatctgaatgttgttacttttggcacatttaattgttgcttggacatg 34971990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36107746 - 36107659
Alignment:
Q  1 acatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttgttacttttagcacatttaactgttacttgga 88  Q
    |||||||| |||||||| |||||||| ||||||||| ||||||| |||||||||||||| ||||| |||||||||| |||| ||||||    
T  36107746 acatatgaaaaaccttcatagtcgtgaccgccacttcgaattctaatctgaatgttgttgcttttggcacatttaattgtttcttgga 36107659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 34972138 - 34972199
Alignment:
Q  207 ttgagaataattagaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttg 268  Q
    |||||||| || |||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  34972138 ttgagaattatgagaaaaacagttaagaaaattttgaatgggtgattgtgatgttgttgttg 34972199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21482478 - 21482414
Alignment:
Q  1 acatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttgttactttt 65  Q
    |||||||| ||||||||  ||||||| ||||||||| | |||||||||||||| |||||||||||    
T  21482478 acatatgagaaaccttcaaagtcgtggccgccacttcggattctgatctgaattttgttactttt 21482414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 36107606 - 36107554
Alignment:
Q  108 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgagg 160  Q
    |||||| |||||||| || |||||||||||||||||||| ||| |||||||||    
T  36107606 tgttttaaatctcttattttgtattttcatgttgaggatagttgagaatgagg 36107554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 115 - 302
Target Start/End: Complemental strand, 8338224 - 8338046
Alignment:
Q  115 aatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgttcttttgactgtaaatgatgtcagaaacaggggaattccaagattgagaat 214  Q
    ||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||| |  |||||||||  ||||| | |||||||||  ||| |||         
T  8338224 aatctcttgttatgtattttcatgtttaggatggttgagaatgaggtgttgtttggtgtgtaaatgacttcagagataggggaatttgaagtttg----- 8338130  T
Q  215 aattagaaaaacaagtgagaaaattttgaatgggagattgtgatgttgttgttgaaacagacaagacaattgttatagttgtcaagag 302  Q
        |||||||||| |||||||| ||| |||||  |||||||||||||||||||||| |||||  | ||||||||  |||||||||||    
T  8338129 ----agaaaaacaattgagaaaagtttaaatggatgattgtgatgttgttgttgaaatagacataaaaattgttaaggttgtcaagag 8338046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 8338359 - 8338280
Alignment:
Q  13 ccttcgtagtcgtgtccgccactttgaattctgatctgaatgttgttacttttagcacatttaactgttacttggacatg 92  Q
    |||||||||||||| ||||||||| ||||||| |||||||| ||||| ||||| |||||||||| |||| ||||||||||    
T  8338359 ccttcgtagtcgtggccgccacttcgaattcttatctgaatattgttgcttttggcacatttaattgttgcttggacatg 8338280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 6838507 - 6838416
Alignment:
Q  1 acatatgataaaccttcgtagtcgtgtccgccactttgaattctgatctgaatgttgttacttttagcacatttaactgttacttggacatg 92  Q
    ||||||||  ||||||| |||||||| || |||||| ||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  6838507 acatatgaacaaccttcatagtcgtgaccaccacttcgaattctaatctgaatgttgttgcttttggcacatttaactgtttcttggacatg 6838416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 6838367 - 6838311
Alignment:
Q  108 tgttttgaatctcttgttgtgtattttcatgttgaggatggttaagaatgaggtgtt 164  Q
    |||||| |||||||| || |||||||| ||||||||||| ||| |||||||||||||    
T  6838367 tgttttaaatctcttattttgtatttttatgttgaggatagttgagaatgaggtgtt 6838311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University