View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10489_low_7 (Length: 357)
Name: NF10489_low_7
Description: NF10489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10489_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 344
Target Start/End: Complemental strand, 980552 - 980223
Alignment:
| Q |
16 |
aaaatttactactaaagtttgtttagagtaatgaaggagcttgactacttctannnnnnnnn-aaaaccccggttaattggtttgaggacttgaactttc |
114 |
Q |
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| T |
980552 |
aaaatttactactaaagtttgtttagagtaatgaaggagcttgactacttctaatttttttttaaaaccccggttaattggtttgaggacttgaactttc |
980453 |
T |
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| Q |
115 |
cacttctaggctaaagttttaaatcacttgcccgaagatcaaaaatccgcagctgagtctagtgccttttcaacaatgtatgctaatccatatgatgcaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
980452 |
cacttctaggctaaagttttaaatcacttgcccgaagatcaaaaatccgcagctgagtctagtgccttttcaacaatgtatgctaatccatacgatgcaa |
980353 |
T |
|
| Q |
215 |
ttggaaaagtatttggacctgagcgctcgggtcgtgttcgaggtttgggaattgggatatccccttctagaaagttcggaccagatgtctgtttaaaggt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
980352 |
ttggaaaagtatttggacctgagcgctcgggtcgtgttcgaggtttgggaattgggatatccccttctagaaagttcggaccagatgtctgtttaaaggt |
980253 |
T |
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| Q |
315 |
attcgaccaagatttttctctgtgtgacct |
344 |
Q |
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||||||||||||||||||| |||||||||| |
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| T |
980252 |
attcgaccaagatttttctttgtgtgacct |
980223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 256
Target Start/End: Complemental strand, 27146665 - 27146425
Alignment:
| Q |
16 |
aaaatttactactaaagtttgtttagagtaatgaaggagcttgactacttctannnnnnnnnaaaaccccggttaattggtttgaggacttgaactttcc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
27146665 |
aaaatttactactaaagtttgtttagagtaatgaaggagcttgactacttctaattttttttaaaaccccgtttaattggtttgaggacttgaactttcc |
27146566 |
T |
|
| Q |
116 |
acttctaggctaaagttttaaatcacttgcccgaagatcaaaaatccgcagctgagtctagtgccttttcaacaatgtatgctaatccatatgatgcaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27146565 |
acttctaggctaaagttttaaatcacttgcccgaagatcaaaaatccgcagttgagtctagtgccttttcaacaatgtatgctaatccatacgatgcaat |
27146466 |
T |
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| Q |
216 |
tggaaaagtatttggacctgagcgctcgggtcgtgttcgag |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
27146465 |
tggaaaagtatttggacctgagcgctcgggtcgtgttcgag |
27146425 |
T |
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